Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 3.4e-94 348.2 164 100.0
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 2.4e-55 219.2 108 87.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.5e-52 209.1 108 83.3
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 8.0e-51 204.1 108 80.6
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.8e-50 203.0 108 81.5
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 5.2e-50 201.4 108 80.6
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 6.8e-50 201.1 108 80.6
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 3.4e-49 198.7 108 75.0
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.4e-49 198.7 108 76.9
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 4.4e-49 198.4 108 75.0
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 7.5e-49 197.6 108 75.9
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 7.5e-49 197.6 108 75.0
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 7.5e-49 197.6 108 75.9
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 9.8e-49 197.2 108 75.9
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.8e-49 197.2 108 75.0
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.8e-49 197.2 108 75.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 1.7e-48 196.4 108 75.9
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 2.2e-48 196.1 108 74.1
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.2e-48 196.1 108 73.1
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 3.7e-48 195.3 108 71.3
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 4.9e-48 194.9 108 75.0
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 4.9e-48 194.9 108 74.1
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 4.9e-48 194.9 108 73.1
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 6.3e-48 194.5 108 74.1
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 6.3e-48 194.5 108 73.1
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 8.3e-48 194.1 108 73.1
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 8.3e-48 194.1 108 73.1
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 75.0
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 73.1
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 73.1
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 73.1
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 73.1
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.4e-47 193.4 108 73.1
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 1.8e-47 193.0 107 74.8
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 1.8e-47 193.0 108 74.1
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.1e-47 192.2 108 72.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.1e-47 192.2 104 75.0
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 3.1e-47 192.2 108 72.2
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 4.1e-47 191.8 104 75.0
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 5.4e-47 191.4 108 73.1
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.0e-47 191.0 108 71.3
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 7.0e-47 191.0 108 71.3
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 9.2e-47 190.7 108 71.3
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.2e-46 190.3 108 71.3
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.2e-46 190.3 108 71.3
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 2.0e-46 189.5 109 75.2
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 2.0e-46 189.5 108 71.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 2.7e-46 189.1 108 72.2
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 3.5e-46 188.7 104 73.1
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.5e-46 188.7 108 72.2
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 4.5e-46 188.3 108 73.1
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 5.9e-46 188.0 108 67.6
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 5.9e-46 188.0 108 72.2
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 7.8e-46 187.6 108 72.2
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 7.8e-46 187.6 108 72.2
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.0e-45 187.2 108 70.4
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.0e-45 187.2 108 74.1
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 1.0e-45 187.2 108 71.3
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 1.0e-45 187.2 108 71.3
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 1.3e-45 186.8 128 64.1
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.7e-45 186.4 108 71.3
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 2.3e-45 186.0 103 75.7
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 2.9e-45 185.7 100 78.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.9e-45 185.7 108 71.3
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.8e-45 185.3 108 71.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.8e-45 185.3 108 71.3
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 3.8e-45 185.3 108 71.3
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.1e-44 183.7 103 72.8
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.1e-44 183.7 99 76.8
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 1.5e-44 183.3 108 72.2
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 3.3e-44 182.2 103 71.8
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.3e-44 181.8 102 70.6
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.6e-44 181.4 108 67.6
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 5.6e-44 181.4 108 70.4
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 5.6e-44 181.4 108 66.7
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 7.3e-44 181.0 110 66.4
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 7.3e-44 181.0 108 68.5
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 9.5e-44 180.6 108 65.7
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.2e-43 180.3 108 69.4
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 1.2e-43 180.3 103 69.9
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 1.2e-43 180.3 103 71.8
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.8e-43 179.1 103 70.9
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.6e-43 178.7 108 68.5
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.6e-43 178.7 108 68.5
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 3.6e-43 178.7 108 68.5
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 6.1e-43 177.9 108 65.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.0e-42 177.2 92 78.3
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.0e-42 177.2 108 63.9
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 1.4e-42 176.8 108 65.7
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 2.3e-42 176.0 108 68.5
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 3.0e-42 175.6 108 65.7
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.0e-42 175.6 103 68.0
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 5.2e-42 174.9 103 67.0
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 6.8e-42 174.5 108 64.8
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 6.8e-42 174.5 92 80.4
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 1.2e-41 173.7 92 75.0
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.2e-41 173.7 108 64.8
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-41 173.7 92 76.1
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 1.5e-41 173.3 108 63.9
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 2.0e-41 172.9 108 63.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 7.5e-41 171.0 95 73.7
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 1.3e-40 170.2 108 63.0
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 1.3e-40 170.2 108 63.0
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.7e-40 168.7 108 63.9
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 3.7e-40 168.7 113 64.6
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 4.9e-40 168.3 108 63.9
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 4.9e-40 168.3 108 63.9
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 4.9e-40 168.3 108 63.9
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 1.1e-39 167.2 100 68.0
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 9.2e-39 164.1 92 71.7
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.2e-38 163.7 100 66.0
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.2e-38 163.7 100 66.0
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 2.7e-38 162.5 180 44.4
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 3.0e-37 159.1 90 71.1
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 1.9e-36 156.4 90 70.0
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 1.9e-36 156.4 90 70.0
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 4.3e-36 155.2 96 69.8
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 5.6e-36 154.8 108 60.2
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 5.6e-36 154.8 83 73.5
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 7.3e-36 154.5 90 71.1
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 7.3e-36 154.5 108 63.9
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 6.2e-35 151.4 110 57.3
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.4e-34 150.2 108 61.1
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 5.2e-34 148.3 99 59.6
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 9.8e-33 144.1 106 61.3
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.3e-32 143.7 92 66.3
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.7e-32 143.3 119 54.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.1e-31 140.6 98 62.2
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 2.4e-31 139.4 109 53.2
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 5.4e-31 138.3 180 40.0
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.9e-29 132.1 99 55.6
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 8.6e-29 131.0 107 50.5
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.9e-28 129.8 100 52.0
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.2e-27 127.1 92 54.3
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 2.1e-27 126.3 232 33.6
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 6.2e-27 124.8 65 78.5
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 1.1e-26 124.0 108 52.8
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 4.0e-26 122.1 108 51.9
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 4.0e-26 122.1 108 51.9
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 4.0e-26 122.1 109 50.5
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 8.9e-26 120.9 65 76.9
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 8.3e-24 114.4 65 72.3
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 8.3e-24 114.4 65 69.2
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 2.4e-23 112.8 102 50.0
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 4.1e-23 112.1 63 74.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 2.1e-22 109.8 63 73.0
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-22 109.0 65 67.7
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 3.8e-16 89.0 48 72.9
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.8e-16 89.0 69 58.0
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 4.9e-16 88.6 48 75.0
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 6.4e-16 88.2 48 75.0
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.1e-15 87.4 57 66.7
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.2e-14 84.0 48 70.8
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.1e-13 78.6 49 61.2
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.1e-10 70.9 41 65.9
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.8e-10 70.1 86 45.3
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 5.2e-10 68.6 44 56.8
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 3.4e-09 65.9 39 69.2
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 2.9e-08 62.8 102 30.4
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.9e-07 60.1 108 29.6
SHI24912 Sapria himalayana HOM05D006348 ORTHO05D008261 1.2e-06 57.4 110 28.2
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 2.7e-06 56.2 92 32.6
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 4.6e-06 55.5 109 28.4


User provided reference genes

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