Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05610 Nelumbo nucifera HOM05D000125 ORTHO05D000807 9.3e-42 172.9 77 100.0
Nn7g36000 Nelumbo nucifera HOM05D000125 ORTHO05D000807 1.8e-24 115.5 59 84.7
Nn4g24686 Nelumbo nucifera HOM05D000125 ORTHO05D000807 1.3e-16 89.4 69 62.3
Nitab4.5_0006361g0010 Nicotiana tabacum HOM05D000125 ORTHO05D000807 4.3e-15 84.3 74 54.1
Potri.001G229500 Populus trichocarpa HOM05D000125 ORTHO05D000807 1.6e-14 82.4 71 57.7
Dinv07257 Davidia involucrata HOM05D000125 ORTHO05D000807 3.7e-14 81.3 77 57.1
MBI08_g09801_MAGBIO Magnolia biondii HOM05D000125 ORTHO05D000807 3.7e-14 81.3 69 59.4
Potri.012G038400 Populus trichocarpa HOM05D000125 ORTHO05D000807 1.1e-13 79.7 66 60.6
Actinidia31705 Actinidia chinensis HOM05D000463 ORTHO05D000807 1.4e-13 79.3 71 54.9
Duzib264G0325 Durio zibethinus HOM05D000125 ORTHO05D000807 1.4e-13 79.3 69 62.3
Duzib147G0906 Durio zibethinus HOM05D000125 ORTHO05D000807 3.1e-13 78.2 69 62.3
Gohir.D07G225600 Gossypium hirsutum HOM05D000125 ORTHO05D000807 3.1e-13 78.2 73 60.3
Gorai.001G260000 Gossypium raimondii HOM05D000125 ORTHO05D000807 3.1e-13 78.2 73 60.3
MBI06_g07518_MAGBIO Magnolia biondii HOM05D000125 ORTHO05D000807 4.1e-13 77.8 69 56.5
Sabra16G0136900 Salix brachista HOM05D000125 ORTHO05D000807 4.1e-13 77.8 71 54.9
Thecc.04G004400 Theobroma cacao HOM05D000125 ORTHO05D000807 4.1e-13 77.8 69 58.0
CSS0026609 Camellia sinensis var. sinensis HOM05D000125 ORTHO05D000807 5.3e-13 77.4 60 55.0
Atru.chr9.1573 Acer truncatum HOM05D000125 ORTHO05D000807 6.9e-13 77.0 69 58.0
Cpa.g.sc189.10 Carica papaya HOM05D000125 ORTHO05D000807 1.2e-12 76.3 73 53.4
Gohir.A07G218500 Gossypium hirsutum HOM05D000125 ORTHO05D000807 1.2e-12 76.3 73 58.9
Atru.chr11.2699 Acer truncatum HOM05D000125 ORTHO05D000807 2.0e-12 75.5 73 53.4
MBI08_g09802_MAGBIO Magnolia biondii HOM05D000125 ORTHO05D000807 5.9e-12 73.9 69 53.6
DCAR_015171 Daucus carota HOM05D000125 ORTHO05D000807 7.7e-12 73.6 74 50.0
Manes.08G043400 Manihot esculenta HOM05D000125 ORTHO05D000807 1.7e-11 72.4 68 47.1
Nitab4.5_0006110g0050 Nicotiana tabacum HOM05D000125 ORTHO05D000807 2.2e-11 72.0 71 50.7
Peaxi162Scf00878g00112 Petunia axillaris HOM05D000125 ORTHO05D000807 2.2e-11 72.0 66 56.1
Nitab4.5_0000892g0180 Nicotiana tabacum HOM05D000125 ORTHO05D000807 2.9e-11 71.6 56 57.1
PGR083G2087 Punica granatum HOM05D000125 ORTHO05D000807 2.9e-11 71.6 74 48.6
PGSC0003DMG400033695 Solanum tuberosum HOM05D000125 ORTHO05D000807 2.9e-11 71.6 69 53.6
Solyc03g097960.1 Solanum lycopersicum HOM05D000125 ORTHO05D000807 3.8e-11 71.2 69 53.6
Actinidia15853 Actinidia chinensis HOM05D000125 ORTHO05D000807 5.0e-11 70.9 71 50.7
Cc02_g27030 Coffea canephora HOM05D000125 ORTHO05D000807 5.0e-11 70.9 60 55.0
Hma1.2p1_0471F.1_g159410 Hydrangea macrophylla HOM05D000125 ORTHO05D000807 6.5e-11 70.5 80 50.0
Solyc01g073890.3 Solanum lycopersicum HOM05D000125 ORTHO05D000807 6.5e-11 70.5 81 49.4
COL.COLO4_32004 Corchorus olitorius HOM05D000125 ORTHO05D000807 1.1e-10 69.7 69 55.1
Eucgr.G03410 Eucalyptus grandis HOM05D000125 ORTHO05D000807 1.1e-10 69.7 60 63.3
A04p33330 Brassica napus HOM05D000125 ORTHO05D000807 1.4e-10 69.3 69 47.8
C04p71020 Brassica napus HOM05D000125 ORTHO05D000807 1.4e-10 69.3 69 47.8
BolC4t28606H Brassica oleracea HOM05D000125 ORTHO05D000807 1.4e-10 69.3 69 47.8
BraA04t18792Z Brassica rapa HOM05D000125 ORTHO05D000807 1.4e-10 69.3 69 47.8
FAN01G0619 Fragaria x ananassa HOM05D000125 ORTHO05D000807 1.4e-10 69.3 61 55.7
Sopen03g028670 Solanum pennellii HOM05D000125 ORTHO05D000807 1.4e-10 69.3 69 52.2
PGSC0003DMG400006309 Solanum tuberosum HOM05D000125 ORTHO05D000807 1.4e-10 69.3 60 56.7
CAN.G637.38 Capsicum annuum HOM05D000125 ORTHO05D000807 1.9e-10 68.9 69 53.6
Duzib128G0486 Durio zibethinus HOM05D000125 ORTHO05D000807 1.9e-10 68.9 69 47.8
PGSC0003DMG400027046 Solanum tuberosum HOM05D000125 ORTHO05D000807 1.9e-10 68.9 69 50.7
Nitab4.5_0000033g0230 Nicotiana tabacum HOM05D000125 ORTHO05D000807 2.5e-10 68.6 69 50.7
TWI09G1624 Tripterygium wilfordii HOM05D000125 ORTHO05D000807 2.5e-10 68.6 64 57.8
FAN01G3158 Fragaria x ananassa HOM05D000125 ORTHO05D000807 3.2e-10 68.2 60 56.7
Nitab4.5_0004855g0030 Nicotiana tabacum HOM05D000125 ORTHO05D000807 3.2e-10 68.2 69 50.7
Sopen06g028830 Solanum pennellii HOM05D000125 ORTHO05D000807 4.2e-10 67.8 70 50.0
FvH4_7g00130 Fragaria vesca HOM05D000125 ORTHO05D000807 7.2e-10 67.0 62 58.1
FAN06G3655 Fragaria x ananassa HOM05D000125 ORTHO05D000807 7.2e-10 67.0 62 58.1
FAN10G3691 Fragaria x ananassa HOM05D000125 ORTHO05D000807 7.2e-10 67.0 62 58.1
Glyma.19G148600 Glycine max HOM05D000125 ORTHO05D000807 7.2e-10 67.0 66 47.0
Solyc06g072460.1 Solanum lycopersicum HOM05D000125 ORTHO05D000807 7.2e-10 67.0 69 50.7
CAN.G65.96 Capsicum annuum HOM05D000125 ORTHO05D000807 9.4e-10 66.6 69 50.7
Lju124C25G11 Lonicera japonica HOM05D000125 ORTHO05D000807 9.4e-10 66.6 67 49.3
Dinv14313 Davidia involucrata HOM05D000125 ORTHO05D000807 1.2e-09 66.2 70 44.3
Lsat_1_v5_gn_8_145260 Lactuca sativa HOM05D000125 ORTHO05D000807 1.2e-09 66.2 69 44.9
Nitab4.5_0000430g0110 Nicotiana tabacum HOM05D000125 ORTHO05D000807 1.2e-09 66.2 70 48.6
Oeu002053.1 Olea europaea HOM05D000125 ORTHO05D000807 1.2e-09 66.2 82 45.1
Peaxi162Scf01064g00001 Petunia axillaris HOM05D000125 ORTHO05D000807 2.1e-09 65.5 69 47.8
TWI32G0442 Tripterygium wilfordii HOM05D000125 ORTHO05D000120 2.7e-09 65.1 62 51.6
CANSAT21G1703 Cannabis sativa HOM05D000125 ORTHO05D000120 3.6e-09 64.7 71 42.3
Duzib093G1895 Durio zibethinus HOM05D000125 ORTHO05D000807 6.1e-09 63.9 63 46.0
Glyma.03G145400 Glycine max HOM05D000125 ORTHO05D000807 1.4e-08 62.8 66 43.9
Migut.B01356 Erythranthe guttata HOM05D000125 ORTHO05D000807 1.8e-08 62.4 60 48.3
Phvul.001G142900 Phaseolus vulgaris HOM05D000125 ORTHO05D000807 3.0e-08 61.6 66 45.5
arahy.Tifrunner.gnm1.ann1.5KSK1I Arachis hypogaea HOM05D000125 ORTHO05D000807 3.9e-08 61.2 60 46.7
Migut.B01357 Erythranthe guttata HOM05D000125 ORTHO05D000807 3.9e-08 61.2 64 48.4
Migut.B01374 Erythranthe guttata HOM05D000125 ORTHO05D000807 3.9e-08 61.2 81 44.4
Oeu007941.1 Olea europaea HOM05D000125 ORTHO05D000807 3.9e-08 61.2 73 45.2
Eucgr.H00610 Eucalyptus grandis HOM05D000125 ORTHO05D000807 5.1e-08 60.8 75 45.3
arahy.Tifrunner.gnm1.ann1.5FV7R2 Arachis hypogaea HOM05D000125 ORTHO05D000807 6.7e-08 60.5 60 46.7
PGR119G0888 Punica granatum HOM05D000125 ORTHO05D000807 6.7e-08 60.5 62 43.5
Migut.B01379 Erythranthe guttata HOM05D000125 ORTHO05D000807 8.8e-08 60.1 60 51.7
Carub.0004s2698 Capsella rubella HOM05D000125 ORTHO05D000807 1.1e-07 59.7 70 42.9
Lsat_1_v5_gn_5_163620 Lactuca sativa HOM05D000125 ORTHO05D000807 1.1e-07 59.7 68 42.6
Migut.B01371 Erythranthe guttata HOM05D000125 ORTHO05D000807 1.5e-07 59.3 63 46.0
PGR083G2552 Punica granatum HOM05D000125 ORTHO05D000807 1.5e-07 59.3 60 43.3
VMungo1383G0449 Vigna mungo HOM05D000125 ORTHO05D000807 1.5e-07 59.3 66 40.9
Lj2C375T1 Lonicera japonica HOM05D000125 ORTHO05D000120 2.0e-07 58.9 70 40.0
THA.LOC104817157 Tarenaya hassleriana HOM05D000125 ORTHO05D000807 2.0e-07 58.9 60 48.3
AL4G43390 Arabidopsis lyrata HOM05D000125 ORTHO05D000807 2.6e-07 58.5 70 42.9
Glyma.03G145300 Glycine max HOM05D000125 ORTHO05D000120 4.4e-07 57.8 60 43.3
Lj1g0005454 Lotus japonicus HOM05D000125 ORTHO05D000120 4.4e-07 57.8 57 45.6
GSVIVG01033572001 Vitis vinifera HOM05D000125 ORTHO05D000807 4.4e-07 57.8 71 42.3
Potri.016G047300 Populus trichocarpa HOM05D000125 ORTHO05D000120 5.7e-07 57.4 61 44.3
SalBow6G1156 Salvia bowleyana HOM05D000125 ORTHO05D000807 5.7e-07 57.4 72 40.3
SalBow6G5941 Salvia bowleyana HOM05D000125 ORTHO05D000807 5.7e-07 57.4 72 40.3
Lj1A359T19 Lonicera japonica HOM05D000125 ORTHO05D000120 7.4e-07 57.0 70 41.4
ATR0807G023 Amborella trichopoda HOM05D000125 ORTHO05D000807 9.7e-07 56.6 70 44.3
Phvul.001G142800 Phaseolus vulgaris HOM05D000125 ORTHO05D000120 9.7e-07 56.6 60 41.7
COL.COLO4_37101 Corchorus olitorius HOM05D000125 ORTHO05D000120 1.3e-06 56.2 64 42.2
Haze_13574 Corylus avellana HOM05D000125 ORTHO05D000120 1.7e-06 55.8 62 45.2
MD07G1002300 Malus domestica HOM05D000125 ORTHO05D000807 1.7e-06 55.8 69 50.7
PGR147G0007 Punica granatum HOM05D000125 ORTHO05D000120 1.7e-06 55.8 64 43.8
BcaC02g10893 Brassica carinata HOM05D000125 ORTHO05D000807 2.2e-06 55.5 60 51.7
Ciclev10018184m.g Citrus clementina HOM05D000125 ORTHO05D000807 2.2e-06 55.5 63 46.0
PGR004G0086 Punica granatum HOM05D000125 ORTHO05D000120 2.2e-06 55.5 67 43.3
A07p18310 Brassica napus HOM05D000125 ORTHO05D000807 2.8e-06 55.1 60 50.0
C04p24000 Brassica napus HOM05D000125 ORTHO05D000807 2.8e-06 55.1 60 50.0
BolC4t23893H Brassica oleracea HOM05D000125 ORTHO05D000807 2.8e-06 55.1 60 50.0
BraA07t29547Z Brassica rapa HOM05D000125 ORTHO05D000807 2.8e-06 55.1 60 50.0
Carub.0004s0835 Capsella rubella HOM05D000125 ORTHO05D000807 2.8e-06 55.1 60 50.0
Haze_23264 Corylus avellana HOM05D000125 ORTHO05D000120 2.8e-06 55.1 68 44.1
Migut.B01367 Erythranthe guttata HOM05D000125 ORTHO05D000807 2.8e-06 55.1 68 44.1
BcaB02g10100 Brassica carinata HOM05D000125 ORTHO05D000807 3.7e-06 54.7 60 50.0
Dinv12476 Davidia involucrata HOM05D000125 ORTHO05D000120 3.7e-06 54.7 60 38.3
GSVIVG01025366001 Vitis vinifera HOM05D000125 ORTHO05D000807 3.7e-06 54.7 63 36.5
ATR0807G125 Amborella trichopoda HOM05D000125 ORTHO05D000807 4.8e-06 54.3 69 39.1
arahy.Tifrunner.gnm1.ann1.HHJE52 Arachis hypogaea HOM05D000125 ORTHO05D000120 4.8e-06 54.3 62 41.9
Cc04_g09330 Coffea canephora HOM05D000125 ORTHO05D000807 4.8e-06 54.3 83 39.8
Dinv14312 Davidia involucrata HOM05D000125 ORTHO05D000807 4.8e-06 54.3 59 40.7
Gorai.012G100400 Gossypium raimondii HOM05D000125 ORTHO05D000807 4.8e-06 54.3 67 37.3
HanXRQChr17g0560631 Helianthus annuus HOM05D000125 ORTHO05D000807 4.8e-06 54.3 66 45.5
Peaxi162Scf00081g00115 Petunia axillaris HOM05D000125 ORTHO05D000807 4.8e-06 54.3 62 50.0
QL04p000937 Quercus lobata HOM05D000125 ORTHO05D000807 4.8e-06 54.3 47 57.4
Sp4g10440 Schrenkiella parvula HOM05D000125 ORTHO05D000807 4.8e-06 54.3 60 48.3
Ciclev10024031m.g Citrus clementina HOM05D000125 ORTHO05D000807 6.3e-06 53.9 69 44.9
Gohir.A04G056752 Gossypium hirsutum HOM05D000125 ORTHO05D000807 8.2e-06 53.5 67 37.3
Lj2C357T13 Lonicera japonica HOM05D000125 ORTHO05D000120 8.2e-06 53.5 65 43.1
Solyc12g038680.1 Solanum lycopersicum HOM05D000125 ORTHO05D000807 8.2e-06 53.5 58 44.8


User provided reference genes

Program Settings