Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 0.0e+00 1112.4 561 100.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.1e-219 766.9 617 68.6
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 8.4e-193 677.6 631 61.3
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 6.1e-191 671.4 622 61.7
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 3.1e-187 659.1 622 59.0
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.4e-184 650.2 609 58.6
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.1e-183 646.4 617 58.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 3.3e-181 639.0 633 58.5
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 1.4e-179 633.6 620 56.3
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 6.9e-179 631.3 608 57.1
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 2.6e-178 629.4 621 57.5
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 2.9e-177 625.9 651 56.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.9e-177 625.9 613 57.6
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 3.6e-175 619.0 596 57.9
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.7e-175 618.6 608 56.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 5.2e-174 615.1 608 56.1
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.2e-172 609.8 621 55.4
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 3.7e-172 609.0 615 56.1
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 6.3e-172 608.2 608 55.8
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 8.5e-169 597.8 612 54.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 2.3e-166 589.7 620 53.7
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.0e-166 589.3 617 54.8
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-165 586.6 614 54.9
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 5.7e-165 585.1 613 55.1
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 8.2e-164 581.3 613 55.0
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 3.5e-162 575.9 618 53.9
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 5.0e-161 572.0 515 61.6
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 8.5e-161 571.2 585 55.2
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 1.2e-159 567.4 612 54.6
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.6e-159 567.0 685 49.3
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 4.4e-157 558.9 626 53.0
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.7e-156 557.0 566 56.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 2.2e-156 556.6 607 54.4
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 6.3e-156 555.1 636 53.9
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 1.4e-155 553.9 604 53.6
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 3.5e-154 549.3 623 52.2
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.7e-154 548.1 570 54.9
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 3.8e-153 545.8 630 52.1
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 8.5e-153 544.7 634 50.0
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.5e-152 543.9 613 51.2
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 1.5e-152 543.9 615 52.0
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 3.2e-152 542.7 623 52.3
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 2.7e-151 539.7 587 53.0
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 3.0e-150 536.2 602 51.7
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 3.4e-149 532.7 620 51.5
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 4.1e-147 525.8 718 45.7
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 5.4e-147 525.4 718 46.2
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.0e-146 523.5 580 53.4
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 3.5e-146 522.7 609 49.8
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 1.0e-145 521.2 621 50.1
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.6e-145 518.5 626 47.9
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 1.9e-144 516.9 608 49.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 7.3e-144 515.0 464 58.8
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 5.2e-142 508.8 617 49.8
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 5.2e-142 508.8 643 49.0
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 1.5e-141 507.3 612 49.7
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 9.8e-141 504.6 619 48.8
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 5.4e-139 498.8 622 48.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 1.9e-136 490.3 592 49.0
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 1.8e-134 483.8 617 48.0
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 8.9e-134 481.5 617 47.8
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 8.9e-134 481.5 608 47.0
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 1.2e-133 481.1 628 47.0
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.5e-133 480.7 626 48.1
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 1.5e-133 480.7 581 49.6
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 5.8e-133 478.8 634 46.5
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 2.2e-132 476.9 674 43.6
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 2.2e-132 476.9 674 43.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 1.4e-131 474.2 625 46.2
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.9e-131 473.8 624 45.7
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 2.4e-131 473.4 621 46.5
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 2.4e-131 473.4 592 48.1
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 9.2e-131 471.5 619 48.0
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 2.0e-130 470.3 628 46.2
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 7.8e-130 468.4 626 45.4
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.0e-129 468.0 413 63.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.3e-129 466.8 587 47.2
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.9e-128 463.8 627 45.5
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 9.5e-128 461.5 592 46.6
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 4.7e-127 459.1 587 47.5
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.4e-126 457.6 627 45.3
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 3.1e-126 456.4 620 45.6
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 7.5e-125 451.8 641 45.4
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.4e-123 447.6 596 44.8
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.0e-121 441.4 589 46.3
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 8.6e-121 438.3 626 45.0
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 8.6e-121 438.3 626 45.0
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 1.8e-118 430.6 592 45.3
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 3.1e-118 429.9 624 45.2
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 4.9e-116 422.5 614 43.0
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 7.1e-115 418.7 623 43.0
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 3.5e-114 416.4 635 42.7
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 3.5e-114 416.4 635 42.8
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 9.6e-112 408.3 601 42.6
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 3.1e-110 403.3 591 43.8
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 7.8e-106 388.7 573 44.2
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 3.1e-102 376.7 585 41.7
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 7.9e-98 362.1 445 46.7
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 6.2e-95 352.4 654 40.2
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 1.2e-90 338.2 531 40.7
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.9e-88 330.9 575 40.0
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 1.6e-87 327.8 522 41.6
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 2.9e-84 317.0 419 45.3
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.4e-84 315.5 364 49.5
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 7.4e-80 302.4 235 68.1
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 6.1e-74 282.7 277 62.1
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 2.0e-61 241.1 457 37.2
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.0e-61 241.1 308 46.8
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 7.7e-61 239.2 260 46.2
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.1e-46 192.2 571 28.0
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 5.3e-46 189.9 264 42.8
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.0e-44 185.7 207 49.3
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.5e-32 145.2 141 54.6
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 2.6e-32 144.4 643 26.6
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 4.4e-32 143.7 153 54.2
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 5.7e-32 143.3 139 57.6
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 9.8e-32 142.5 566 26.5
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.3e-27 127.5 290 37.6
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 4.3e-27 127.1 195 41.5
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.0e-25 120.6 73 75.3
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 8.9e-25 119.4 78 67.9
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.0e-24 118.2 94 73.4
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.4e-24 117.5 73 69.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.9e-23 114.4 73 68.5
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.7e-23 114.0 579 22.8
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 8.3e-23 112.8 137 45.3
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.4e-22 111.3 185 39.5
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 5.4e-22 110.2 184 40.8
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 9.2e-22 109.4 157 49.0
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 7.8e-21 106.3 163 46.6
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 9.5e-19 99.4 116 48.3
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 6.8e-17 93.2 76 61.8
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 2.0e-13 81.6 90 50.0
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.7e-13 81.3 80 47.5
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 9.5e-11 72.8 67 53.7


User provided reference genes

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