Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 4.3e-59 231.5 151 100.0
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 1.9e-35 152.9 152 57.9
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 9.1e-25 117.5 153 60.1
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.5e-22 109.4 142 47.2
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 5.5e-22 108.2 142 61.3
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 8.8e-20 100.9 151 62.9
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 2.8e-18 95.9 149 56.4
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 8.2e-18 94.4 141 56.0
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 1.1e-17 94.0 146 41.1
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 1.2e-16 90.5 151 55.6
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 1.6e-16 90.1 152 59.2
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 5.9e-16 88.2 164 50.0
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 5.9e-16 88.2 150 38.7
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.3e-15 87.0 151 39.1
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.7e-15 86.7 153 57.5
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.7e-15 86.7 142 47.9
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 1.7e-15 86.7 129 48.1
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.8e-15 85.5 147 58.5
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 6.5e-15 84.7 156 51.9
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 8.5e-15 84.3 169 50.9
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.5e-14 82.8 142 43.0
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 5.5e-14 81.6 148 54.7
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 5.5e-14 81.6 134 52.2
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 9.4e-14 80.9 160 37.5
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 9.4e-14 80.9 159 53.5
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 1.2e-13 80.5 149 55.7
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 2.1e-13 79.7 154 55.8
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 2.1e-13 79.7 147 53.7
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.7e-13 79.3 139 48.9
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 3.6e-13 79.0 155 51.0
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 4.7e-13 78.6 156 53.8
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 4.7e-13 78.6 156 53.8
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 4.7e-13 78.6 142 34.5
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 4.7e-13 78.6 150 53.3
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.1e-13 78.2 139 48.9
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 6.1e-13 78.2 148 51.4
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 6.1e-13 78.2 146 36.3
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 8.0e-13 77.8 140 50.7
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 8.0e-13 77.8 143 36.4
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.4e-12 77.0 138 55.1
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.4e-12 77.0 152 36.2
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.8e-12 76.6 154 38.3
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.3e-12 76.3 137 46.7
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 3.0e-12 75.9 152 47.4
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 4.0e-12 75.5 161 45.3
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 4.0e-12 75.5 152 41.4
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 5.2e-12 75.1 137 46.7
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 5.2e-12 75.1 154 37.7
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 6.7e-12 74.7 144 36.8
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 6.7e-12 74.7 142 38.0
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 6.7e-12 74.7 154 52.6
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 6.7e-12 74.7 134 38.1
CSS0015684 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 8.8e-12 74.3 141 57.4
CDE05G1898 Ceratophyllum demersum HOM05D000157 ORTHO05D000691 2.6e-11 72.8 119 37.8
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 2.6e-11 72.8 149 45.6
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 2.6e-11 72.8 143 36.4
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 3.3e-11 72.4 154 33.8
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 3.3e-11 72.4 125 44.8
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 3.3e-11 72.4 152 46.7
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 4.4e-11 72.0 144 36.1
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.7e-11 71.6 142 33.8
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 5.7e-11 71.6 143 35.0
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 5.7e-11 71.6 140 42.1
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 7.5e-11 71.2 150 44.7
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.3e-10 70.5 142 33.1
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.7e-10 70.1 142 33.1
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 2.2e-10 69.7 195 27.7
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 2.8e-10 69.3 149 49.0
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 4.8e-10 68.6 156 42.9
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 4.8e-10 68.6 156 42.9
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 4.8e-10 68.6 156 42.9
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 6.3e-10 68.2 156 48.7
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 8.2e-10 67.8 158 51.3
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.2e-10 67.8 156 44.2
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.4e-09 67.0 149 32.9
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 1.8e-09 66.6 156 43.6
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.1e-09 65.9 161 39.8
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 3.1e-09 65.9 160 46.2
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 3.1e-09 65.9 145 46.9
Ah.02g126210 Amaranthus hybridus HOM05D031888 ORTHO05D004477 4.1e-09 65.5 179 35.8
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 4.1e-09 65.5 150 38.0
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 9.1e-09 64.3 152 43.4
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 9.1e-09 64.3 159 47.8
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.2e-08 63.9 156 42.3
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.2e-08 63.9 161 38.5
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 1.2e-08 63.9 141 51.8
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 1.6e-08 63.5 133 36.8
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 1.6e-08 63.5 140 53.6
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 2.0e-08 63.2 145 53.1
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 3.5e-08 62.4 151 40.4
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 3.5e-08 62.4 161 49.1
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 3.5e-08 62.4 128 32.0
Sopen05g029880 Solanum pennellii HOM05D008176 ORTHO05D004477 4.5e-08 62.0 125 40.0
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 1.0e-07 60.8 150 32.7
Psat7g056440 Pisum sativum HOM05D008176 ORTHO05D004477 1.0e-07 60.8 150 32.7
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 1.3e-07 60.5 141 31.2
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 1.3e-07 60.5 157 51.0
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.3e-07 60.5 138 34.1
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 1.3e-07 60.5 152 32.9
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.3e-07 60.5 144 45.8
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 1.7e-07 60.1 156 47.4
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.7e-07 60.1 133 48.9
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 2.9e-07 59.3 111 55.9
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 2.9e-07 59.3 144 35.4
FvH4_1g20240 Fragaria vesca HOM05D013332 ORTHO05D004477 5.0e-07 58.5 174 39.1
FAN19G2695 Fragaria x ananassa HOM05D013332 ORTHO05D004477 5.0e-07 58.5 174 36.8
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 5.0e-07 58.5 148 31.8
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 5.0e-07 58.5 152 32.9
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 5.0e-07 58.5 40 65.0
RcHm_v2.0_Chr2g0112381 Rosa chinensis HOM05D013332 ORTHO05D004477 5.0e-07 58.5 175 33.1
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 5.0e-07 58.5 147 32.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 6.5e-07 58.2 126 34.1
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 6.5e-07 58.2 165 38.2
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 1.1e-06 57.4 154 46.1
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 1.1e-06 57.4 40 65.0
Migut.H02240 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.5e-06 57.0 157 42.0
FAN23G0907 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.5e-06 57.0 174 29.9
FAN26G3011 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.5e-06 57.0 174 32.8
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 1.5e-06 57.0 128 55.5
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.5e-06 57.0 166 35.5
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.5e-06 57.0 140 40.0
FAN28G1274 Fragaria x ananassa HOM05D013332 ORTHO05D004477 1.9e-06 56.6 174 32.8
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 1.9e-06 56.6 145 49.0
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 1.9e-06 56.6 125 53.6
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 1.9e-06 56.6 117 56.4
CDE03G0262 Ceratophyllum demersum HOM05D001201 ORTHO05D004477 2.5e-06 56.2 145 42.8
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 2.5e-06 56.2 145 44.8
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 2.5e-06 56.2 132 31.8
Sed0027320 Sechium edule HOM05D026294 ORTHO05D004477 2.5e-06 56.2 133 45.9
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.2e-06 55.8 127 54.3
Gohir.D12G082301 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.2e-06 55.8 144 34.7
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 3.2e-06 55.8 137 31.4
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 4.2e-06 55.5 113 31.9
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 4.2e-06 55.5 113 31.9
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 4.2e-06 55.5 164 36.0
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 4.2e-06 55.5 161 38.5
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 5.5e-06 55.1 115 34.8
CANSAT25G2152 Cannabis sativa HOM05D008046 ORTHO05D004477 5.5e-06 55.1 168 47.6
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.5e-06 55.1 132 34.1
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 5.5e-06 55.1 121 52.9
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 5.5e-06 55.1 132 34.1
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.5e-06 55.1 132 34.1
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 5.5e-06 55.1 143 38.5
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 7.2e-06 54.7 125 47.2
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 7.2e-06 54.7 151 49.7
PGSC0003DMG400016791 Solanum tuberosum HOM05D008176 ORTHO05D004477 7.2e-06 54.7 127 34.6


User provided reference genes

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