Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.7e-299 1030.4 512 100.0
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.6e-172 609.4 336 85.4
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.3e-160 570.5 335 80.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 8.6e-160 567.8 332 80.1
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 9.5e-159 564.3 323 81.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.2e-158 563.9 319 82.4
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.7e-158 562.0 304 88.2
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.8e-157 560.1 343 77.6
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.3e-155 553.9 337 76.9
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.9e-155 552.0 337 76.6
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.6e-153 547.0 325 78.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.5e-153 545.8 334 75.1
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 4.6e-153 545.4 328 77.4
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.0e-153 545.0 334 75.7
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-152 543.9 326 78.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.7e-152 543.5 328 77.1
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 5.1e-152 542.0 333 75.4
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.6e-152 541.6 328 77.1
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 6.6e-152 541.6 326 78.2
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-151 540.8 340 74.7
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.5e-151 539.7 338 75.7
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 2.5e-151 539.7 338 74.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 4.3e-151 538.9 343 74.3
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.6e-151 538.5 327 77.1
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 7.3e-151 538.1 325 76.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.1e-150 536.6 319 79.3
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-149 533.5 326 75.8
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.2e-148 530.8 334 75.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.2e-148 530.8 318 78.6
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 2.0e-148 530.0 332 74.7
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.7e-147 526.9 324 75.6
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.7e-147 526.9 327 74.0
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.9e-147 525.4 325 76.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 4.1e-146 522.3 337 73.3
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.2e-145 520.8 319 76.2
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.2e-145 520.8 328 75.0
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 4.6e-145 518.8 319 75.9
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 7.8e-145 518.1 333 72.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.7e-144 516.9 335 72.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.7e-144 516.9 339 71.7
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.3e-144 516.5 344 70.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 3.0e-144 516.2 325 74.8
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.0e-144 516.2 326 74.8
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.1e-143 514.2 332 73.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.1e-143 514.2 332 73.5
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.1e-143 514.2 332 70.8
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.5e-143 513.8 333 73.0
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 1.5e-143 513.8 333 72.4
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 3.3e-143 512.7 322 74.8
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 4.3e-143 512.3 326 74.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 4.3e-143 512.3 326 74.2
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 5.6e-143 511.9 325 74.8
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 7.3e-143 511.5 325 74.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 7.3e-143 511.5 325 74.2
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 7.3e-143 511.5 325 74.2
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 7.3e-143 511.5 325 73.5
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 7.3e-143 511.5 334 71.3
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.3e-143 511.5 345 69.3
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 7.3e-143 511.5 353 70.5
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.6e-143 511.1 323 73.7
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.1e-142 510.0 325 73.8
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.8e-142 509.6 330 73.9
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.1e-141 507.7 317 74.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.1e-141 507.7 323 73.7
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.4e-141 507.3 323 73.1
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.4e-141 507.3 333 71.5
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.8e-141 506.9 326 73.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 4.0e-141 505.8 326 73.9
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.2e-141 505.4 333 71.2
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 6.9e-141 505.0 332 71.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.0e-140 503.4 323 74.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.7e-139 500.4 333 70.6
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.9e-139 499.6 333 69.1
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 4.9e-139 498.8 321 74.5
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-138 497.7 331 71.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-138 497.7 331 71.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.4e-138 496.5 331 70.1
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 4.2e-138 495.7 346 69.1
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.2e-138 495.7 308 76.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 5.4e-138 495.4 351 67.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.7e-137 493.0 340 69.1
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.7e-137 493.0 337 69.1
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.3e-136 490.7 312 74.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.0e-136 489.6 313 73.5
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.5e-135 487.3 333 70.0
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.9e-135 486.9 326 72.1
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.9e-135 486.9 338 68.6
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-135 486.9 313 73.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 2.5e-135 486.5 348 68.7
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 7.3e-135 485.0 333 69.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.6e-134 483.8 313 72.8
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.6e-134 483.8 332 70.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.1e-134 483.4 346 67.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.8e-134 483.0 344 68.3
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 6.9e-133 478.4 336 68.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 9.0e-133 478.0 295 74.6
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.3e-131 474.2 310 71.6
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 3.8e-131 472.6 304 73.7
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.6e-129 467.2 337 67.1
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-128 464.2 274 78.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 1.3e-128 464.2 334 66.2
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 8.7e-128 461.5 338 65.7
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 3.3e-127 459.5 300 72.3
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 5.6e-127 458.8 331 66.2
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.8e-126 455.7 319 67.1
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 4.8e-126 455.7 333 65.2
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.4e-125 454.1 330 65.5
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 5.8e-124 448.7 339 64.9
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 6.4e-123 445.3 340 63.2
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 8.4e-123 444.9 329 64.1
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.2e-121 441.0 280 72.5
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.3e-120 437.6 308 68.2
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.7e-120 435.3 284 71.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 1.1e-117 427.9 307 67.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 6.9e-117 425.2 312 65.1
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.4e-114 417.5 333 61.9
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.1e-113 413.7 321 62.6
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.8e-112 410.6 327 60.6
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.3e-111 406.0 331 60.1
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.6e-111 404.8 337 59.6
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 6.3e-110 402.1 324 62.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.1e-109 401.4 332 58.4
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.8e-107 392.9 295 64.4
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.2e-106 389.8 267 64.4
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 6.1e-105 385.6 310 59.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.1e-101 374.8 264 67.8
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.3e-99 367.9 290 57.9
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 3.8e-99 366.3 220 76.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.1e-95 354.8 231 71.4
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 1.2e-92 344.7 312 54.2
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.0e-91 341.7 269 62.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.1e-87 328.2 279 58.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.7e-87 325.1 254 61.0
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.0e-81 305.4 221 64.7
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 8.0e-81 305.4 180 77.8
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.6e-79 300.4 172 79.7
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.5e-74 283.9 172 74.4
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 8.0e-73 278.9 209 63.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.1e-69 268.5 184 70.7
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.8e-67 260.0 142 84.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.0e-63 247.7 365 38.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.4e-61 239.6 196 61.2
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 4.5e-60 236.5 266 42.9
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 9.5e-58 228.8 307 40.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.5e-55 221.5 195 56.9
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.0e-55 221.1 195 56.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 5.7e-55 219.5 321 38.9
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.3e-42 176.8 116 75.9
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 7.1e-37 159.5 324 32.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.9e-34 151.4 135 56.3
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.1e-28 131.3 90 72.2
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 3.9e-19 100.5 56 78.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-15 87.4 114 44.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.2e-07 62.4 30 93.3
GSVIVG01001056001 Vitis vinifera HOM05D004580 ORTHO05D439289 3.8e-06 57.4 96 36.5


User provided reference genes

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