Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-39 165.2 82 100.0
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 3.3e-21 104.8 62 79.0
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.6e-21 103.2 73 72.6
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.6e-20 102.4 64 75.0
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.4e-19 99.4 68 69.1
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 4.0e-19 97.8 68 66.2
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.2e-18 96.3 68 69.1
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.2e-18 96.3 62 71.0
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 3.4e-18 94.7 62 69.4
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 3.4e-18 94.7 68 69.1
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.2e-17 92.0 62 69.4
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 6.5e-17 90.5 62 71.0
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 6.5e-17 90.5 62 72.6
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-16 89.7 62 67.7
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.1e-16 89.7 63 71.4
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.4e-16 89.4 62 66.1
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 4.2e-16 87.8 62 67.7
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 7.1e-16 87.0 62 61.3
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.6e-15 85.9 62 64.5
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.6e-15 84.3 62 64.5
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.0e-14 83.2 68 58.8
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.8e-14 82.4 70 55.7
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.8e-14 82.4 62 61.3
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.8e-14 82.4 62 61.3
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.8e-14 82.4 62 61.3
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.3e-14 82.0 62 61.3
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 3.9e-14 81.3 68 54.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.9e-14 81.3 68 54.4
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.9e-14 81.3 62 67.7
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 3.9e-14 81.3 62 61.3
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 3.9e-14 81.3 62 64.5
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 5.1e-14 80.9 68 54.4
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 6.7e-14 80.5 62 59.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 6.7e-14 80.5 70 52.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 8.7e-14 80.1 68 52.9
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.1e-13 79.7 61 62.3
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.5e-13 79.3 67 55.2
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.5e-13 79.3 63 63.5
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.5e-13 79.3 71 56.3
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.9e-13 79.0 62 58.1
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.9e-13 79.0 62 58.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.9e-13 79.0 62 66.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.9e-13 79.0 68 63.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.5e-13 78.6 62 62.9
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 2.5e-13 78.6 68 58.8
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 2.5e-13 78.6 88 48.9
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 3.3e-13 78.2 68 51.5
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 3.3e-13 78.2 70 52.9
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 4.3e-13 77.8 68 51.5
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 4.3e-13 77.8 62 66.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.3e-13 77.8 62 58.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 4.3e-13 77.8 62 64.5
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 4.3e-13 77.8 68 60.3
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 5.7e-13 77.4 70 55.7
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 7.4e-13 77.0 62 59.7
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 9.6e-13 76.6 62 54.8
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 9.6e-13 76.6 68 54.4
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 9.6e-13 76.6 68 60.3
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 1.3e-12 76.3 70 57.1
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.3e-12 76.3 62 54.8
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.6e-12 75.9 68 52.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.6e-12 75.9 62 56.5
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.6e-12 75.9 68 60.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.1e-12 75.5 68 52.9
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.8e-12 75.1 68 52.9
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 2.8e-12 75.1 62 58.1
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.8e-12 75.1 62 58.1
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 3.7e-12 74.7 62 58.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 3.7e-12 74.7 62 58.1
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.1e-11 73.2 64 53.1
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.1e-11 73.2 62 58.1
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.8e-11 72.4 68 52.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.8e-11 72.4 61 52.5
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.8e-11 72.4 63 60.3
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.4e-11 72.0 68 50.0
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 2.4e-11 72.0 68 48.5
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 2.4e-11 72.0 68 48.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 2.4e-11 72.0 68 48.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 2.4e-11 72.0 68 48.5
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.1e-11 71.6 68 47.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 3.1e-11 71.6 62 54.8
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.0e-11 71.2 72 51.4
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 5.3e-11 70.9 62 53.2
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 5.3e-11 70.9 68 48.5
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 6.9e-11 70.5 61 55.7
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.2e-10 69.7 69 50.7
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.5e-10 69.3 61 49.2
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 2.0e-10 68.9 61 55.7
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 2.6e-10 68.6 70 50.0
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 3.4e-10 68.2 62 56.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 4.5e-10 67.8 61 54.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 4.5e-10 67.8 70 50.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.0e-09 66.6 68 45.6
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.8e-09 64.7 72 47.2
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.4e-08 62.8 61 45.9
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.9e-08 62.4 59 50.8
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 9.3e-08 60.1 62 50.0
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 2.1e-07 58.9 62 48.4
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 3.0e-06 55.1 48 47.9


User provided reference genes

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