Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 8.9e-63 243.4 123 100.0
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.9e-25 119.4 87 79.3
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.9e-25 119.4 87 79.3
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.2e-20 101.7 57 96.5
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.7e-19 99.0 57 94.7
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.5e-17 93.2 59 84.7
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 2.2e-13 79.3 59 67.8
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 5.0e-13 78.2 59 69.5
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 5.0e-13 78.2 59 69.5
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 1.4e-12 76.6 59 72.9
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 3.2e-12 75.5 57 68.4
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 5.5e-12 74.7 59 69.5
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 5.5e-12 74.7 59 69.5
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 1.2e-11 73.6 58 65.5
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.2e-11 73.6 58 70.7
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 2.1e-11 72.8 57 66.7
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 2.1e-11 72.8 57 66.7
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 3.6e-11 72.0 58 67.2
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 6.1e-11 71.2 58 62.1
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 6.1e-11 71.2 59 64.4
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 6.1e-11 71.2 59 64.4
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 7.9e-11 70.9 53 67.9
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 7.9e-11 70.9 53 69.8
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 1.0e-10 70.5 53 69.8
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 1.0e-10 70.5 60 65.0
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 1.4e-10 70.1 58 62.1
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 1.8e-10 69.7 53 67.9
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 2.3e-10 69.3 53 67.9
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 2.3e-10 69.3 53 62.3
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 3.9e-10 68.6 59 62.7
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 3.9e-10 68.6 59 62.7
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 3.9e-10 68.6 53 66.0
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 5.1e-10 68.2 53 66.0
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 5.1e-10 68.2 58 65.5
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 6.7e-10 67.8 57 64.9
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 8.8e-10 67.4 57 64.9
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 1.1e-09 67.0 59 62.7
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.1e-09 67.0 61 60.7
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.1e-09 67.0 57 63.2
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.5e-09 66.6 60 61.7
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.5e-09 66.6 60 61.7
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 1.5e-09 66.6 57 64.9
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 1.5e-09 66.6 51 66.7
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 2.0e-09 66.2 56 62.5
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 2.6e-09 65.9 55 63.6
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 2.6e-09 65.9 59 59.3
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.6e-09 65.9 60 60.0
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 2.6e-09 65.9 56 62.5
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 3.3e-09 65.5 53 66.0
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 3.3e-09 65.5 51 64.7
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.3e-09 65.5 60 60.0
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 4.4e-09 65.1 59 61.0
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 5.7e-09 64.7 60 60.0
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 7.4e-09 64.3 55 63.6
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 62.7
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 7.4e-09 64.3 51 58.8
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 9.7e-09 63.9 51 60.8
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 9.7e-09 63.9 51 60.8
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 9.7e-09 63.9 57 59.6
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 9.7e-09 63.9 60 60.0
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 9.7e-09 63.9 57 59.6
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 1.3e-08 63.5 51 60.8
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 1.3e-08 63.5 50 66.0
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 1.7e-08 63.2 59 57.6
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 1.7e-08 63.2 53 62.3
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 1.7e-08 63.2 58 63.8
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 2.2e-08 62.8 51 62.7
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 2.2e-08 62.8 51 62.7
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 2.8e-08 62.4 57 59.6
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 2.8e-08 62.4 60 58.3
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 3.7e-08 62.0 54 57.4
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 3.7e-08 62.0 51 58.8
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 3.7e-08 62.0 58 60.3
Nn135s43805 Nelumbo nucifera HOM05D066312 ORTHO05D008339 3.7e-08 62.0 52 75.0
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 3.7e-08 62.0 59 59.3
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 4.8e-08 61.6 51 60.8
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 6.3e-08 61.2 51 58.8
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 6.3e-08 61.2 58 55.2
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 6.3e-08 61.2 58 55.2
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 8.2e-08 60.8 51 56.9
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.4e-07 60.1 58 60.3
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 1.8e-07 59.7 52 55.8
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 1.8e-07 59.7 62 53.2
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 2.4e-07 59.3 53 58.5
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 2.4e-07 59.3 58 58.6
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 2.4e-07 59.3 55 63.6
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 3.1e-07 58.9 58 51.7
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 4.1e-07 58.5 54 53.7
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 4.1e-07 58.5 54 53.7
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 5.3e-07 58.2 56 53.6
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 7.0e-07 57.8 51 54.9
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 9.1e-07 57.4 61 52.5
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 9.1e-07 57.4 57 57.9
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 1.2e-06 57.0 61 52.5
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 1.5e-06 56.6 57 54.4
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 2.6e-06 55.8 54 51.9
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 2.6e-06 55.8 67 46.3
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 4.5e-06 55.1 55 54.5


User provided reference genes

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