Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 2.8e-22 107.8 58 100.0
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.6e-22 107.5 57 100.0
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 3.6e-22 107.5 57 100.0
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.5e-20 102.1 58 94.8
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.4e-20 100.5 57 94.7
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.6e-17 92.0 57 86.0
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 6.8e-13 76.6 57 70.2
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 6.8e-13 76.6 57 70.2
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 6.8e-13 76.6 57 66.7
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 4.4e-12 73.9 57 71.9
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 5.8e-12 73.6 57 70.2
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 9.8e-12 72.8 55 67.3
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 1.7e-11 72.0 57 68.4
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 2.2e-11 71.6 56 64.3
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 3.7e-11 70.9 56 69.6
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 6.4e-11 70.1 55 65.5
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 6.4e-11 70.1 55 65.5
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 1.1e-10 69.3 56 66.1
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 1.9e-10 68.6 56 60.7
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 1.9e-10 68.6 57 63.2
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 1.9e-10 68.6 57 63.2
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 3.2e-10 67.8 52 65.4
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 3.2e-10 67.8 58 63.8
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 3.2e-10 67.8 52 67.3
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 4.1e-10 67.4 56 60.7
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 4.1e-10 67.4 52 67.3
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 4.1e-10 67.4 57 63.2
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 4.1e-10 67.4 57 63.2
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 4.1e-10 67.4 52 67.3
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 4.1e-10 67.4 55 67.3
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 7.1e-10 66.6 52 65.4
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 7.1e-10 66.6 52 61.5
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 9.2e-10 66.2 55 65.5
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.2e-09 65.9 55 63.6
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.2e-09 65.9 57 63.2
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 1.6e-09 65.5 57 63.2
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.6e-09 65.5 58 62.1
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.6e-09 65.5 58 62.1
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 1.6e-09 65.5 52 63.5
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 2.1e-09 65.1 55 63.6
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.1e-09 65.1 52 63.5
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.7e-09 64.7 58 60.3
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 2.7e-09 64.7 54 63.0
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.5e-09 64.3 58 60.3
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 3.5e-09 64.3 58 60.3
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 4.6e-09 63.9 57 61.4
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 6.0e-09 63.5 52 65.4
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 6.0e-09 63.5 54 61.1
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 7.8e-09 63.2 54 63.0
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.0e-08 62.8 58 60.3
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.3e-08 62.4 59 59.3
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 1.3e-08 62.4 57 57.9
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 1.7e-08 62.0 49 63.3
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 1.7e-08 62.0 57 57.9
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 1.7e-08 62.0 48 64.6
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 1.7e-08 62.0 49 63.3
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 2.3e-08 61.6 48 62.5
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 2.3e-08 61.6 48 62.5
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 2.3e-08 61.6 56 64.3
Nn135s43805 Nelumbo nucifera HOM05D066312 ORTHO05D008339 2.3e-08 61.6 52 73.1
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 2.3e-08 61.6 58 58.6
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 2.3e-08 61.6 58 58.6
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 2.3e-08 61.6 52 65.4
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 3.0e-08 61.2 55 60.0
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 3.0e-08 61.2 55 58.2
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 3.0e-08 61.2 48 62.5
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 3.0e-08 61.2 52 61.5
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 3.0e-08 61.2 55 58.2
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 3.9e-08 60.8 49 57.1
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 5.1e-08 60.5 56 60.7
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 8.6e-08 59.7 48 60.4
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 1.1e-07 59.3 48 62.5
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 1.1e-07 59.3 49 61.2
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 1.5e-07 58.9 48 60.4
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.5e-07 58.9 55 56.4
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 1.5e-07 58.9 55 61.8
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 1.5e-07 58.9 55 61.8
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 1.9e-07 58.5 48 58.3
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 1.9e-07 58.5 55 56.4
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 3.3e-07 57.8 51 56.9
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 3.3e-07 57.8 56 58.9
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 3.3e-07 57.8 55 54.5
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 4.3e-07 57.4 53 56.6
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 4.3e-07 57.4 55 56.4
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.6e-07 57.0 51 56.9
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 5.6e-07 57.0 51 56.9
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 7.3e-07 56.6 50 56.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 1.2e-06 55.8 55 58.2
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 1.6e-06 55.5 48 56.2
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 2.8e-06 54.7 51 52.9
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 3.6e-06 54.3 51 52.9
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 3.6e-06 54.3 51 52.9
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 4.7e-06 53.9 59 52.5
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 4.7e-06 53.9 55 52.7
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 4.7e-06 53.9 53 49.1
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 6.2e-06 53.5 59 52.5
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 8.1e-06 53.1 58 53.4


User provided reference genes

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