Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.4e-155 551.6 271 100.0
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.0e-112 407.9 247 80.6
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.4e-105 386.7 247 75.7
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-105 386.7 247 75.3
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.5e-104 382.1 247 74.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 6.7e-103 377.9 255 74.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 8.7e-103 377.5 255 74.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.6e-101 373.2 247 72.5
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.2e-101 372.9 247 73.7
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.0e-99 366.3 248 71.0
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.6e-99 365.9 247 72.1
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 3.4e-99 365.5 251 71.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.5e-99 365.2 243 70.8
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.3e-98 363.6 248 70.2
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.7e-98 363.2 247 71.7
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.8e-98 362.1 247 71.7
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 8.5e-98 360.9 253 70.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.2e-97 359.0 235 72.8
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 4.2e-97 358.6 234 73.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 5.5e-97 358.2 249 69.5
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-96 357.1 247 69.6
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.2e-96 357.1 252 69.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.7e-96 355.9 249 69.1
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.6e-96 355.5 243 68.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 6.1e-96 354.8 247 70.0
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.1e-96 354.8 256 69.5
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.0e-95 354.0 243 69.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-95 354.0 243 69.1
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.8e-95 353.2 247 69.2
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.0e-95 352.4 243 68.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 3.9e-95 352.1 234 73.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.9e-95 352.1 247 67.2
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 6.7e-95 351.3 234 73.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 8.8e-95 350.9 241 68.9
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.1e-94 350.5 247 68.8
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.1e-94 350.5 234 72.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.9e-94 349.7 241 68.5
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.5e-94 349.4 247 68.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.5e-94 349.4 230 73.5
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 3.3e-94 349.0 248 68.1
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.3e-94 349.0 233 70.8
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.3e-94 349.0 262 66.0
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.7e-94 348.2 248 69.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 5.7e-94 348.2 234 72.2
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.3e-93 347.1 247 69.6
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.3e-93 347.1 243 68.3
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.8e-93 345.9 248 68.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.8e-93 345.9 248 67.3
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.7e-93 345.5 235 71.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 4.8e-93 345.1 235 69.4
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 6.3e-93 344.7 241 68.0
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.3e-93 344.7 230 72.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.1e-92 344.0 234 72.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.4e-92 343.6 246 67.9
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.8e-92 343.2 231 73.2
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.8e-92 343.2 247 67.6
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.4e-92 342.8 231 72.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.4e-92 342.8 229 71.6
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.9e-92 341.3 199 83.4
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 2.6e-91 339.3 275 62.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.8e-90 335.5 270 62.2
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.8e-90 335.5 244 67.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.5e-89 332.8 247 66.0
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 4.2e-89 332.0 273 61.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.2e-88 330.5 247 64.4
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 2.1e-88 329.7 270 61.1
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.6e-88 328.9 243 66.3
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 4.7e-88 328.6 252 63.1
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 6.1e-88 328.2 247 64.0
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.4e-87 327.0 231 68.8
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.8e-87 326.6 247 63.6
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 5.1e-87 325.1 247 62.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 6.7e-87 324.7 247 62.3
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.5e-86 323.6 248 63.3
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 3.3e-86 322.4 231 68.0
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 5.7e-86 321.6 248 62.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 7.4e-86 321.2 247 62.3
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.3e-85 320.5 234 65.8
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.3e-85 320.5 243 63.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.7e-85 320.1 198 76.3
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 3.7e-85 318.9 235 64.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 8.2e-85 317.8 233 66.5
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.1e-84 317.4 234 66.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.4e-84 317.0 234 65.8
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.4e-84 317.0 247 61.9
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.4e-84 316.2 248 62.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.1e-84 315.8 232 66.8
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 4.1e-84 315.5 198 77.3
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 4.1e-84 315.5 247 62.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 5.3e-84 315.1 233 66.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.0e-84 314.7 315 54.3
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 9.1e-84 314.3 231 65.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.0e-83 313.2 247 61.1
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.4e-83 312.4 233 67.0
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.5e-83 312.0 234 65.4
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.9e-83 311.6 247 63.2
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.0e-82 310.8 235 66.4
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.7e-82 310.1 230 66.5
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 3.8e-82 308.9 233 65.7
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 5.0e-82 308.5 233 65.2
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 6.5e-82 308.1 233 65.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 8.5e-82 307.8 292 54.5
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.1e-81 307.4 229 65.9
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.9e-81 306.6 248 62.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.5e-81 306.2 292 54.1
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.2e-80 303.9 193 73.6
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.7e-80 302.8 215 68.8
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.0e-79 300.8 259 59.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.8e-79 300.1 240 62.1
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.3e-79 299.7 233 63.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 4.4e-78 295.4 233 62.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.4e-76 290.4 234 60.3
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.1e-76 289.3 244 60.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.1e-76 289.3 254 59.1
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.1e-76 288.9 229 59.0
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-74 284.3 192 69.3
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-74 282.7 192 68.8
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.7e-72 276.2 196 68.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.7e-72 276.2 201 66.2
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.8e-71 273.5 240 56.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 3.0e-71 272.7 255 56.5
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.3e-70 269.2 247 56.3
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.1e-64 250.0 178 69.1
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.8e-60 236.9 158 72.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.4e-60 236.5 156 72.4
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 4.5e-59 232.3 152 71.7
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-58 229.6 243 49.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.5e-57 227.3 351 41.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.9e-57 226.9 196 56.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 7.2e-57 224.9 234 53.0
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 8.9e-55 218.0 234 50.4
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.5e-54 217.2 248 50.0
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.3e-53 214.2 235 48.9
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.8e-51 204.9 262 45.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 9.5e-49 198.0 138 68.8
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.5e-46 190.7 280 40.7
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.0e-42 177.9 194 51.5
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.0e-42 176.4 121 68.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.3e-41 172.6 117 70.1
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.1e-39 166.4 113 70.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.3e-37 158.3 109 70.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.2e-36 156.4 110 69.1
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.2e-36 156.4 177 44.1
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.1e-36 156.0 178 47.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 7.0e-36 155.2 95 76.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.6e-35 154.1 210 41.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.7e-34 150.6 270 38.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.6e-32 142.9 95 71.6
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.1e-31 139.8 138 55.8
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 3.1e-31 139.8 152 48.7
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.0e-30 137.1 177 44.6
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.7e-29 134.0 129 56.6
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.1e-27 127.1 95 64.2
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.3e-26 123.6 77 72.7
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.1e-26 122.5 137 49.6
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.9e-25 120.6 72 79.2
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.8e-24 116.7 132 53.8
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 4.0e-23 112.8 77 67.5
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.0e-22 110.5 66 78.8
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.4e-22 109.4 75 65.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.3e-21 107.8 59 83.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.3e-18 97.8 75 60.0
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-18 97.4 61 72.1
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-11 74.7 91 45.1
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.7e-11 73.6 90 45.6
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.1e-09 68.2 40 77.5
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.1e-07 61.6 40 67.5
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-06 57.4 56 51.8


User provided reference genes

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