Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.1e-147 526.6 257 100.0
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 84.4
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.9e-124 448.7 257 83.7
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 2.9e-124 448.7 257 83.3
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 5.0e-124 448.0 257 83.7
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 4.2e-123 444.9 257 83.3
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.2e-122 443.4 257 82.9
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.1e-122 442.6 257 82.1
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 2.7e-122 442.2 257 83.3
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 8.0e-122 440.7 257 82.5
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 6.7e-121 437.6 256 81.2
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 6.7e-121 437.6 256 83.2
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 8.8e-121 437.2 254 81.1
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.2e-120 436.8 256 82.8
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 84.4
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.0e-120 436.0 257 80.9
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.6e-120 435.6 257 80.9
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 3.3e-120 435.3 257 81.3
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.4e-120 434.9 257 81.7
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 4.4e-120 434.9 254 81.9
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 7.5e-120 434.1 256 81.6
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 7.5e-120 434.1 257 81.7
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 7.5e-120 434.1 257 83.7
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.7e-119 433.0 257 84.0
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.7e-119 433.0 257 84.0
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 2.2e-119 432.6 257 82.5
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 2.2e-119 432.6 257 81.7
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 2.2e-119 432.6 257 81.3
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.8e-119 432.2 254 83.9
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 3.7e-119 431.8 254 82.7
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 3.7e-119 431.8 256 81.2
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 3.7e-119 431.8 258 81.4
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 6.3e-119 431.0 254 81.1
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 8.2e-119 430.6 257 80.9
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-118 429.9 256 83.6
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 2.4e-118 429.1 257 80.9
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 3.1e-118 428.7 256 83.2
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 3.1e-118 428.7 257 80.9
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 3.1e-118 428.7 257 80.9
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.1e-118 428.7 257 80.2
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 5.3e-118 427.9 257 80.2
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 1.2e-117 426.8 257 81.3
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 2.7e-117 425.6 256 81.2
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 2.7e-117 425.6 257 81.7
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.5e-117 425.2 256 80.1
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.5e-117 425.2 256 80.1
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 7.7e-117 424.1 257 80.9
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.0e-116 423.7 271 76.8
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 80.2
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 80.2
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.0
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.3e-116 423.3 258 79.8
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.7e-116 422.9 257 79.4
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.7e-116 422.9 257 79.4
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.5e-116 421.0 271 75.6
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.5e-116 420.6 257 79.4
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.9e-115 419.5 257 80.2
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 2.5e-115 419.1 265 78.9
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.2e-115 418.3 257 79.4
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 4.2e-115 418.3 257 79.4
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 5.5e-115 417.9 257 80.2
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 80.2
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 80.2
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 80.2
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.1e-114 416.0 257 77.0
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 3.6e-114 415.2 257 78.2
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 78.2
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 78.2
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 78.2
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 78.2
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 78.2
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 8.0e-114 414.1 257 77.4
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.0e-113 413.7 257 79.8
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-113 413.3 257 77.8
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-113 413.3 257 77.8
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.4e-113 413.3 257 77.8
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.4e-113 413.3 263 77.2
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 1.8e-113 412.9 257 77.4
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.8e-113 412.9 246 80.1
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 1.8e-113 412.9 257 77.0
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 5.2e-113 411.4 257 77.0
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.2e-113 411.4 257 77.4
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.2e-113 411.4 257 77.4
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 6.8e-113 411.0 257 77.4
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.3e-111 406.8 230 84.8
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.3e-111 406.8 302 68.5
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 1.8e-110 402.9 257 76.3
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 4.5e-109 398.3 258 74.8
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.0e-108 397.1 281 72.2
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.7e-108 396.4 257 73.5
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.7e-108 396.4 255 75.7
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.5e-107 393.3 253 74.3
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-106 390.2 257 77.4
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.3e-105 386.0 257 73.9
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 3.4e-104 382.1 257 72.0
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 4.4e-104 381.7 417 51.6
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 3.7e-103 378.6 254 73.6
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 6.6e-100 367.9 231 77.1
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 5.6e-99 364.8 214 79.4
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.7e-95 353.2 223 77.6
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 9.2e-94 347.4 257 68.5
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.7e-93 345.9 198 83.3
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 2.3e-92 342.8 257 69.3
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 5.6e-91 338.2 245 67.3
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 9.5e-91 337.4 250 66.4
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 3.6e-90 335.5 245 68.2
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 6.2e-90 334.7 253 66.8
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 3.1e-89 332.4 256 64.5
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 5.6e-83 311.6 198 74.2
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 8.4e-71 271.2 161 80.7
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 2.1e-69 266.5 170 73.5
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.5e-67 260.4 153 79.7
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.7e-61 239.6 142 80.3
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 6.6e-60 235.0 247 47.4
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.3e-59 232.3 132 83.3
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 3.1e-57 226.1 254 48.8
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 6.0e-53 211.8 130 78.5
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.3e-52 209.9 198 58.6
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 5.1e-52 208.8 267 41.9
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.9e-49 198.4 116 77.6
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 4.9e-47 192.2 114 80.7
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.4e-47 191.8 112 82.1
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-45 187.2 156 60.3
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.5e-43 180.6 257 44.0
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 7.4e-43 178.3 105 81.9
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 9.6e-43 177.9 105 81.9
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.4e-40 169.5 105 78.1
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 7.1e-38 161.8 105 76.2
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.6e-37 160.6 104 76.9
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.1e-34 150.2 112 67.0
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.2e-31 140.2 91 69.2
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.4e-24 116.3 102 57.8
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.4e-22 110.9 94 59.6
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 1.2e-21 107.8 67 79.1
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.1e-19 101.3 60 83.3
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.2e-14 82.8 55 70.9
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 9.7e-11 71.6 60 63.3
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 1.4e-09 67.8 40 82.5


User provided reference genes

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