Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 6.1e-100 367.5 184 100.0
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 9.6e-69 263.8 171 71.3
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 4.6e-63 245.0 185 65.4
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 2.8e-60 235.7 183 61.7
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 2.8e-60 235.7 180 64.4
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 6.2e-60 234.6 181 60.8
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 1.8e-59 233.0 181 61.3
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 1.5e-58 229.9 182 61.0
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 2.0e-58 229.6 181 59.7
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 2.0e-58 229.6 150 68.7
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 3.4e-58 228.8 177 59.9
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 4.4e-58 228.4 184 59.2
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 9.9e-58 227.3 167 61.1
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 9.9e-58 227.3 181 62.4
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.7e-57 226.5 186 59.1
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 1.7e-57 226.5 181 56.9
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.2e-57 226.1 179 62.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 2.9e-57 225.7 187 57.8
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 3.8e-57 225.3 171 62.0
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 3.8e-57 225.3 188 58.5
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 1.9e-56 223.0 174 58.6
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.4e-56 222.6 159 62.3
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 2.4e-56 222.6 155 62.6
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 2.4e-56 222.6 186 57.5
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 2.4e-56 222.6 188 60.6
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 2.4e-56 222.6 187 57.8
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 3.2e-56 222.2 188 55.3
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 3.2e-56 222.2 181 56.4
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 5.4e-56 221.5 191 57.6
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 5.4e-56 221.5 171 62.0
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 5.4e-56 221.5 172 57.6
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 9.3e-56 220.7 187 57.8
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 1.2e-55 220.3 172 57.0
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.2e-55 220.3 174 59.8
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.6e-55 219.9 169 57.4
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 1.6e-55 219.9 181 57.5
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 2.7e-55 219.2 174 54.6
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.5e-55 218.8 159 57.2
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 4.6e-55 218.4 169 60.9
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 4.6e-55 218.4 184 56.5
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 4.6e-55 218.4 167 60.5
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 6.0e-55 218.0 184 56.5
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 1.0e-54 217.2 153 60.8
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 1.0e-54 217.2 185 56.2
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.0e-54 217.2 182 61.0
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.7e-54 216.5 171 57.9
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 3.0e-54 215.7 174 58.0
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 3.0e-54 215.7 183 59.6
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 3.9e-54 215.3 174 56.3
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 3.9e-54 215.3 163 61.3
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 3.9e-54 215.3 163 61.3
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 3.9e-54 215.3 185 59.5
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 5.1e-54 214.9 157 61.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 5.1e-54 214.9 188 55.3
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 5.1e-54 214.9 181 56.9
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 5.1e-54 214.9 174 58.0
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 6.6e-54 214.5 157 61.1
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 6.6e-54 214.5 153 63.4
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 1.1e-53 213.8 179 57.0
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.5e-53 213.4 182 60.4
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 2.5e-53 212.6 163 60.1
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 4.3e-53 211.8 171 60.2
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 5.6e-53 211.5 180 56.1
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 5.6e-53 211.5 181 56.9
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 5.6e-53 211.5 155 62.6
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 5.6e-53 211.5 181 60.8
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 9.6e-53 210.7 180 56.7
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 2.8e-52 209.1 151 57.6
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 2.8e-52 209.1 153 59.5
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 6.2e-52 208.0 182 59.9
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 8.1e-52 207.6 180 51.1
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 5.3e-51 204.9 189 52.4
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.2e-50 203.8 181 54.1
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 2.6e-50 202.6 141 64.5
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 2.6e-50 202.6 183 54.6
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 3.4e-50 202.2 188 54.3
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 4.5e-50 201.8 167 55.7
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 7.6e-50 201.1 148 62.2
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 7.6e-50 201.1 171 55.6
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 9.9e-50 200.7 184 54.3
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.9e-49 199.1 182 53.8
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 4.9e-49 198.4 147 57.8
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 6.4e-49 198.0 182 53.8
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 6.4e-49 198.0 188 48.9
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 8.4e-49 197.6 174 57.5
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 8.4e-49 197.6 174 56.9
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 1.4e-48 196.8 174 56.9
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 1.4e-48 196.8 182 53.8
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 1.9e-48 196.4 174 56.9
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 2.4e-48 196.1 188 48.4
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 3.2e-48 195.7 182 52.2
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 3.2e-48 195.7 182 53.8
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 3.2e-48 195.7 182 55.5
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.2e-48 195.3 174 54.6
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 4.2e-48 195.3 174 54.6
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 7.1e-48 194.5 174 56.3
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 9.3e-48 194.1 179 52.5
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 1.2e-47 193.7 182 53.3
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 1.2e-47 193.7 182 53.3
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.2e-47 193.7 182 53.3
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.2e-47 193.7 180 55.0
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 2.1e-47 193.0 185 53.0
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 6.0e-47 191.4 182 49.5
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 8.7e-46 187.6 150 55.3
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.9e-45 186.4 148 56.1
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 6.2e-44 181.4 145 55.2
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 1.2e-42 177.2 155 59.4
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.8e-41 172.2 179 48.0
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 3.8e-41 172.2 179 48.0
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 3.5e-39 165.6 160 47.5
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 8.7e-38 161.0 182 47.3
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.1e-37 160.6 151 46.4
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 7.4e-37 157.9 180 49.4
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 6.2e-36 154.8 145 55.2
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.4e-35 153.7 177 40.7
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.5e-34 150.2 187 38.5
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 2.9e-33 146.0 123 57.7
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 1.1e-32 144.1 113 64.6
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.6e-31 140.2 130 56.9
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.6e-31 140.2 109 59.6
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 3.5e-31 139.0 109 67.9
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 4.1e-27 125.6 124 50.8
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 1.6e-23 113.6 159 37.7
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.2e-17 93.2 70 55.7
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 2.9e-17 92.8 116 44.8
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 3.8e-17 92.4 62 64.5
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 1.9e-16 90.1 146 34.9
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 2.5e-16 89.7 104 46.2
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 6.1e-15 85.1 69 56.5
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.8e-14 83.6 62 54.8
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 3.0e-14 82.8 62 54.8
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 1.8e-11 73.6 73 47.9
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 7.7e-10 68.2 72 50.0
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 2.2e-09 66.6 46 65.2
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 2.7e-07 59.7 145 22.8


User provided reference genes

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