Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05152 Nelumbo nucifera HOM05D000160 ORTHO05D048522 2.4e-117 425.6 229 100.0
Nn3g16441 Nelumbo nucifera HOM05D000160 ORTHO05D000496 1.3e-35 154.1 105 85.7
Nn4g22297 Nelumbo nucifera HOM05D000160 ORTHO05D000496 1.2e-20 104.4 102 66.7
TAR622G1406 Trochodendron aralioides HOM05D000160 ORTHO05D000496 1.3e-14 84.3 106 54.7
TAR629G3376 Trochodendron aralioides HOM05D000160 ORTHO05D000496 1.7e-14 84.0 106 54.7
TAR374G0544 Trochodendron aralioides HOM05D000160 ORTHO05D000496 2.2e-14 83.6 106 52.8
TAR374G1613 Trochodendron aralioides HOM05D000160 ORTHO05D000496 2.2e-14 83.6 106 52.8
QL03p052409 Quercus lobata HOM05D000160 ORTHO05D000496 1.7e-11 73.9 99 45.5
Dinv10946 Davidia involucrata HOM05D000160 ORTHO05D000496 2.3e-11 73.6 111 41.4
MBI11_g34177_MAGBIO Magnolia biondii HOM05D000160 ORTHO05D048522 6.6e-11 72.0 117 41.9
Cfa009374 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.1e-10 71.2 108 40.7
Haze_12433 Corylus avellana HOM05D000160 ORTHO05D000496 1.5e-10 70.9 108 40.7
Atru.chr11.2339 Acer truncatum HOM05D000160 ORTHO05D000496 2.8e-09 66.6 99 42.4
TPR.G5826 Trifolium pratense HOM05D000160 ORTHO05D000496 2.8e-09 66.6 109 37.6
Thecc.03G130200 Theobroma cacao HOM05D000160 ORTHO05D000496 3.6e-09 66.2 99 39.4
Thecc.02G206000 Theobroma cacao HOM05D000160 ORTHO05D000496 4.8e-09 65.9 100 41.0
Aqoxy5G03330 Aquilegia oxysepala HOM05D000160 ORTHO05D000496 6.2e-09 65.5 120 37.5
Sabra01G0041400 Salix brachista HOM05D000160 ORTHO05D000496 8.1e-09 65.1 106 37.7
Dinv35313 Davidia involucrata HOM05D000160 ORTHO05D000496 1.1e-08 64.7 126 39.7
CSS0045337 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000496 1.8e-08 63.9 112 40.2
Ciclev10030731m.g Citrus clementina HOM05D000160 ORTHO05D000496 2.4e-08 63.5 66 45.5
Actinidia18343 Actinidia chinensis HOM05D000160 ORTHO05D000496 4.0e-08 62.8 106 41.5
CSS0048810 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000496 4.0e-08 62.8 112 40.2
Dinv05473 Davidia involucrata HOM05D000160 ORTHO05D000496 5.3e-08 62.4 106 40.6
Psat1g112080 Pisum sativum HOM05D000160 ORTHO05D000496 6.9e-08 62.0 72 43.1
QL10p002779 Quercus lobata HOM05D000160 ORTHO05D000496 6.9e-08 62.0 100 38.0
CiPaw.06G103800 Carya illinoinensis HOM05D000160 ORTHO05D000496 9.0e-08 61.6 122 36.9
Gorai.001G058400 Gossypium raimondii HOM05D000160 ORTHO05D000496 9.0e-08 61.6 101 36.6
Ciclev10030729m.g Citrus clementina HOM05D000160 ORTHO05D000496 3.4e-07 59.7 99 38.4
Hma1.2p1_0538F.1_g174470 Hydrangea macrophylla HOM05D000160 ORTHO05D000496 3.4e-07 59.7 65 50.8
Cfa016376 Carpinus fangiana HOM05D000160 ORTHO05D000496 4.4e-07 59.3 99 38.4
Gohir.D02G147933 Gossypium hirsutum HOM05D000160 ORTHO05D000496 4.4e-07 59.3 110 38.2
Gohir.D07G055200 Gossypium hirsutum HOM05D000160 ORTHO05D000496 4.4e-07 59.3 101 35.6
Manes.07G089900 Manihot esculenta HOM05D000160 ORTHO05D000496 4.4e-07 59.3 107 39.3
CSS0002719 Camellia sinensis var. sinensis HOM05D000160 ORTHO05D000496 5.8e-07 58.9 46 58.7
Cfa018787 Carpinus fangiana HOM05D000160 ORTHO05D000496 5.8e-07 58.9 104 35.6
QL09p010574 Quercus lobata HOM05D000160 ORTHO05D000496 7.6e-07 58.5 101 39.6
Duzib248G0888 Durio zibethinus HOM05D000160 ORTHO05D000496 9.9e-07 58.2 102 39.2
Cpa.g.sc43.72 Carica papaya HOM05D000160 ORTHO05D000496 1.3e-06 57.8 71 43.7
Gorai.005G165700 Gossypium raimondii HOM05D000160 ORTHO05D000496 1.3e-06 57.8 110 35.5
Duzib084G1158 Durio zibethinus HOM05D000160 ORTHO05D000496 1.7e-06 57.4 62 50.0
FAN05G0443 Fragaria x ananassa HOM05D000160 ORTHO05D000496 1.7e-06 57.4 62 46.8
FAN05G0908 Fragaria x ananassa HOM05D000160 ORTHO05D000496 1.7e-06 57.4 62 46.8
FAN09G3056 Fragaria x ananassa HOM05D000160 ORTHO05D000496 1.7e-06 57.4 63 49.2
CANSAT64G0433 Cannabis sativa HOM05D000160 ORTHO05D000496 2.2e-06 57.0 102 39.2
CiPaw.11G006400 Carya illinoinensis HOM05D000160 ORTHO05D000496 2.2e-06 57.0 102 38.2
Gohir.A03G125200 Gossypium hirsutum HOM05D000160 ORTHO05D000496 2.9e-06 56.6 110 37.3
GSVIVG01010500001 Vitis vinifera HOM05D000160 ORTHO05D000496 2.9e-06 56.6 31 74.2
Actinidia25566 Actinidia chinensis HOM05D000160 ORTHO05D000496 3.8e-06 56.2 148 33.8
arahy.Tifrunner.gnm1.ann1.FX58XH Arachis hypogaea HOM05D000160 ORTHO05D000496 3.8e-06 56.2 72 44.4
COL.COLO4_28138 Corchorus olitorius HOM05D000160 ORTHO05D000496 3.8e-06 56.2 97 36.1
Gohir.1Z049509 Gossypium hirsutum HOM05D000160 ORTHO05D000496 3.8e-06 56.2 63 47.6
Gohir.A07G050700 Gossypium hirsutum HOM05D000160 ORTHO05D000496 3.8e-06 56.2 63 47.6
Haze_07148 Corylus avellana HOM05D000160 ORTHO05D000496 4.9e-06 55.8 104 33.7
MBI11_g24622_MAGBIO Magnolia biondii HOM05D000160 ORTHO05D000496 4.9e-06 55.8 101 40.6
Medtr6g059870 Medicago truncatula HOM05D000160 ORTHO05D000496 4.9e-06 55.8 70 44.3
Sed0019300 Sechium edule HOM05D000160 ORTHO05D000496 4.9e-06 55.8 102 37.3
Haze_00124 Corylus avellana HOM05D000160 ORTHO05D000496 6.4e-06 55.5 99 37.4
Potri.001G057200 Populus trichocarpa HOM05D000160 ORTHO05D000496 6.4e-06 55.5 107 34.6
Duzib068G1093 Durio zibethinus HOM05D000160 ORTHO05D000496 8.4e-06 55.1 62 51.6
Manes.06G120300 Manihot esculenta HOM05D000160 ORTHO05D000496 8.4e-06 55.1 52 46.2
TWI75G0845 Tripterygium wilfordii HOM05D000160 ORTHO05D000496 8.4e-06 55.1 97 38.1
vmacro19119 Vaccinium macrocarpon HOM05D000160 ORTHO05D000496 8.4e-06 55.1 107 34.6
vmacro23019 Vaccinium macrocarpon HOM05D000160 ORTHO05D000496 8.4e-06 55.1 107 34.6
GSVIVG01008568001 Vitis vinifera HOM05D000160 ORTHO05D000496 8.4e-06 55.1 72 41.7


User provided reference genes

Program Settings