Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 5.5e-49 197.2 92 100.0
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.3e-21 106.3 63 74.6
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 8.3e-21 103.6 55 81.8
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 2.4e-20 102.1 64 70.3
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 2.4e-20 102.1 63 73.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 3.1e-20 101.7 53 83.0
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 4.1e-20 101.3 52 86.5
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.0e-20 100.5 55 81.8
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.0e-19 99.0 59 72.9
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.7e-19 98.6 52 80.8
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 5.9e-19 97.4 50 78.0
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 5.9e-19 97.4 60 70.0
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.3e-18 96.3 54 75.9
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.3e-18 96.3 52 80.8
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.3e-18 96.3 52 80.8
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.3e-18 96.3 50 86.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 1.7e-18 95.9 50 84.0
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.7e-18 95.9 65 69.2
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.2e-18 95.5 50 84.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.2e-18 95.5 52 78.8
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.2e-18 95.5 52 80.8
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.0e-18 94.4 52 78.8
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 8.5e-18 93.6 50 82.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.1e-17 93.2 50 82.0
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.5e-17 92.8 57 68.4
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.9e-17 92.4 53 77.4
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 2.5e-17 92.0 50 80.0
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.5e-17 92.0 50 80.0
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 2.5e-17 92.0 50 80.0
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 3.2e-17 91.7 59 71.2
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 3.2e-17 91.7 50 78.0
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 3.2e-17 91.7 50 80.0
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 4.2e-17 91.3 49 79.6
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 4.2e-17 91.3 49 79.6
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 4.2e-17 91.3 52 75.0
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 4.2e-17 91.3 53 79.2
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 4.2e-17 91.3 52 75.0
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 5.5e-17 90.9 52 71.2
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 5.5e-17 90.9 52 71.2
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 5.5e-17 90.9 50 78.0
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 5.5e-17 90.9 49 77.6
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 5.5e-17 90.9 49 77.6
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 5.5e-17 90.9 49 77.6
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 5.5e-17 90.9 49 77.6
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 5.5e-17 90.9 52 71.2
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 5.5e-17 90.9 59 71.2
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.5e-17 90.9 60 68.3
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.5e-17 90.9 60 68.3
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 5.5e-17 90.9 51 76.5
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 7.2e-17 90.5 49 77.6
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 7.2e-17 90.5 52 71.2
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 7.2e-17 90.5 50 78.0
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 9.5e-17 90.1 52 73.1
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 9.5e-17 90.1 52 71.2
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 9.5e-17 90.1 52 76.9
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.2e-16 89.7 57 66.7
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.2e-16 89.7 52 73.1
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.2e-16 89.7 53 75.5
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.2e-16 89.7 52 71.2
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.2e-16 89.7 50 78.0
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 1.6e-16 89.4 45 82.2
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.6e-16 89.4 45 82.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.6e-16 89.4 50 78.0
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 1.6e-16 89.4 52 75.0
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.6e-16 89.4 50 80.0
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.1e-16 89.0 49 79.6
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.1e-16 89.0 61 70.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.8e-16 88.6 56 69.6
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 2.8e-16 88.6 52 75.0
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 4.7e-16 87.8 52 76.9
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 4.7e-16 87.8 49 77.6
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 8.0e-16 87.0 45 80.0
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.0e-16 87.0 50 76.0
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.0e-16 87.0 50 76.0
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 8.0e-16 87.0 58 69.0
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 1.4e-15 86.3 45 82.2
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.8e-15 85.9 45 82.2
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 2.3e-15 85.5 55 65.5
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.0e-15 84.7 51 72.5
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 2.6e-14 82.0 46 82.6
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.4e-14 81.3 52 71.2
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.4e-14 81.3 56 62.5
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.8e-13 78.6 52 69.2
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 6.3e-13 77.4 57 64.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 8.3e-13 77.0 54 68.5
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-12 76.6 54 66.7
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.1e-12 76.6 54 66.7
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.4e-12 76.3 54 66.7
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 2.4e-12 75.5 49 69.4
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.2e-11 73.2 98 41.8
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 4.5e-11 71.2 52 65.4
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 1.0e-10 70.1 39 74.4
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.7e-10 69.3 87 42.5
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.7e-10 69.3 39 76.9
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.7e-10 69.3 52 65.4
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.0e-10 67.8 33 84.8
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 8.6e-10 67.0 39 76.9
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 8.6e-10 67.0 57 50.9
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.1e-09 66.6 39 74.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.9e-09 65.9 38 73.7
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.9e-09 65.9 45 66.7
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 3.3e-09 65.1 39 71.8
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.5e-09 63.5 76 44.7
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.5e-09 63.5 76 44.7
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 6.1e-08 60.8 32 78.1
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 6.1e-08 60.8 31 77.4
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 8.0e-08 60.5 59 50.8
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.4e-07 59.7 35 77.1
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 5.2e-07 57.8 35 74.3
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.2e-06 56.6 33 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.6e-06 55.5 36 69.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 2.6e-06 55.5 25 84.0


User provided reference genes

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