Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 7.2e-259 896.7 458 100.0
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.0e-172 610.5 427 73.5
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.6e-160 569.3 392 72.4
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 3.6e-157 558.9 427 67.0
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 2.0e-155 553.1 428 66.4
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.2e-154 549.7 427 65.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 9.1e-153 544.3 430 65.6
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 2.7e-152 542.7 426 64.1
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.2e-150 535.8 429 64.8
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 5.5e-150 535.0 391 67.3
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.7e-149 532.7 429 63.4
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 8.0e-149 531.2 426 64.1
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.0e-148 530.8 428 66.8
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 4.0e-148 528.9 427 64.9
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.2e-148 528.5 429 64.1
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.8e-146 522.7 429 62.5
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 3.1e-145 519.2 429 62.0
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 7.0e-145 518.1 427 61.8
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.1e-142 510.8 427 62.8
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 2.3e-140 503.1 427 60.9
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.2e-139 500.7 422 61.4
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 7.0e-137 491.5 416 60.1
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.2e-136 490.7 394 61.7
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.0e-136 490.0 389 63.0
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 1.7e-135 486.9 430 57.9
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 2.3e-135 486.5 384 64.3
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 2.9e-135 486.1 425 60.7
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.5e-134 483.8 391 62.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 1.5e-134 483.8 391 62.1
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 1.9e-134 483.4 391 62.9
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.6e-133 480.3 391 62.9
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 3.6e-133 479.2 391 62.1
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 1.4e-132 477.2 394 60.4
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 5.2e-132 475.3 396 62.1
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.0e-131 473.4 426 59.2
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.7e-130 470.3 397 58.9
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.9e-130 469.5 429 57.8
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 4.9e-130 468.8 390 60.8
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 6.4e-130 468.4 449 57.5
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.2e-129 466.1 427 57.8
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 4.1e-129 465.7 376 63.8
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 7.0e-129 464.9 410 57.8
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 7.0e-129 464.9 395 59.0
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 9.2e-129 464.5 390 62.3
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.2e-128 464.2 390 61.3
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.6e-128 463.8 398 58.8
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 5.9e-128 461.8 450 56.9
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.0e-127 461.1 390 59.7
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 3.0e-127 459.5 387 59.4
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 6.6e-127 458.4 409 57.0
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.6e-127 458.0 387 59.2
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 2.8e-125 453.0 386 60.1
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.8e-125 453.0 390 59.5
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 3.6e-125 452.6 396 60.1
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 4.0e-124 449.1 373 61.7
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 8.9e-124 448.0 383 59.8
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.6e-123 446.4 425 54.8
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.4e-123 445.7 391 59.8
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 2.2e-122 443.4 398 56.0
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 9.2e-121 438.0 382 58.4
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.2e-120 437.6 427 52.9
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 7.8e-120 434.9 355 60.0
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.3e-119 433.3 380 59.7
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 1.1e-118 431.0 435 54.5
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 2.1e-117 426.8 391 55.8
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 2.1e-117 426.8 450 52.7
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 6.8e-116 421.8 445 53.3
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 4.9e-114 415.6 421 54.9
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.4e-108 396.7 337 62.0
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 8.9e-108 394.8 321 63.6
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.0e-107 393.7 360 60.3
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.8e-107 392.1 387 52.5
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.9e-105 387.1 428 50.9
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 5.4e-105 385.6 377 55.7
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 7.1e-105 385.2 380 53.9
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.6e-104 384.0 383 53.8
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 2.5e-102 376.7 386 54.4
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 3.3e-102 376.3 382 52.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 7.3e-102 375.2 379 53.6
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 7.3e-102 375.2 380 53.7
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.6e-101 374.0 391 52.4
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 8.1e-101 371.7 382 53.9
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.8e-100 370.5 379 52.0
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.8e-100 370.5 380 52.4
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 3.8e-98 362.8 389 51.4
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.9e-98 362.5 389 50.4
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 4.9e-98 362.5 385 49.6
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 5.4e-97 359.0 430 47.2
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 9.3e-97 358.2 287 63.8
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.2e-96 357.8 389 50.1
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 2.1e-96 357.1 389 50.1
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 6.0e-96 355.5 384 50.3
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.1e-95 352.4 337 53.4
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.1e-94 351.3 337 53.1
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 2.5e-94 350.1 389 49.4
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.3e-87 327.8 386 47.4
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 2.5e-86 323.6 411 45.5
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 9.0e-84 315.1 409 44.7
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.9e-78 297.4 331 49.8
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.9e-78 297.4 308 53.6
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 3.3e-78 296.6 388 45.6
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 2.1e-72 277.3 321 48.9
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 2.3e-71 273.9 422 40.5
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 3.0e-71 273.5 300 52.0
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.5e-70 271.2 356 44.9
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.9e-59 232.6 251 51.0
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.4e-57 228.0 364 40.9
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.8e-55 221.1 404 36.1
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.5e-54 218.0 331 39.0
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 7.7e-43 179.1 189 51.3
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.0e-39 167.2 385 34.0
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.4e-38 163.3 178 49.4
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.8e-37 160.6 151 51.7
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.2e-33 146.0 161 53.4
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 9.4e-33 145.6 350 30.9
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.1e-32 144.4 190 45.3
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.8e-31 141.4 381 29.7
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 4.0e-31 140.2 110 60.0
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.6e-30 137.5 73 86.3
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 7.5e-30 136.0 168 46.4
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 7.5e-30 136.0 168 46.4
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 3.7e-29 133.7 342 28.9
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.1e-28 132.1 105 68.6
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 4.1e-28 130.2 197 40.6
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.7e-26 124.8 86 70.9
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 8.6e-26 122.5 123 48.8
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.6e-24 117.1 108 61.1
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.4e-23 115.2 86 68.6
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.5e-22 109.4 108 58.3
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 7.3e-17 92.8 66 68.2
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 7.3e-17 92.8 66 68.2
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.3e-15 87.8 106 43.4
QL04p035577 Quercus lobata HOM05D005911 ORTHO05D007565 3.3e-09 67.4 63 57.1
QL04p046160 Quercus lobata HOM05D005911 ORTHO05D338257 7.3e-09 66.2 63 55.6
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 8.9e-07 59.3 46 69.6
Lsat_1_v5_gn_3_139021 Lactuca sativa HOM05D000115 ORTHO05D000645 1.5e-06 58.5 34 76.5
TPR.G30862 Trifolium pratense HOM05D003225 ORTHO05D003818 5.8e-06 56.6 390 22.1


User provided reference genes

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