Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05063 Nelumbo nucifera HOM05D002134 ORTHO05D003893 1.0e-28 129.4 66 100.0
Cpa.g.sc64.75 Carica papaya HOM05D002134 ORTHO05D003893 2.8e-18 94.7 63 73.0
Potri.002G262700 Populus trichocarpa HOM05D002134 ORTHO05D003893 3.6e-18 94.4 63 73.0
TAR625G0668 Trochodendron aralioides HOM05D002134 ORTHO05D003893 3.6e-18 94.4 63 74.6
Atru.chr13.505 Acer truncatum HOM05D002134 ORTHO05D003893 4.7e-18 94.0 63 74.6
Sabra02G0199500 Salix brachista HOM05D002134 ORTHO05D003893 8.0e-18 93.2 63 73.0
Dinv36066 Davidia involucrata HOM05D002134 ORTHO05D003893 1.8e-17 92.0 63 71.4
Nn5g29546 Nelumbo nucifera HOM05D002134 ORTHO05D003893 1.8e-17 92.0 63 71.4
Potri.014G181000 Populus trichocarpa HOM05D002134 ORTHO05D003893 1.8e-17 92.0 63 71.4
Sabra14G0141100 Salix brachista HOM05D002134 ORTHO05D003893 1.8e-17 92.0 63 71.4
TWI36G0543 Tripterygium wilfordii HOM05D002134 ORTHO05D003893 1.8e-17 92.0 63 69.8
Thecc.08G024600 Theobroma cacao HOM05D002134 ORTHO05D003893 2.3e-17 91.7 63 73.0
vmacro21629 Vaccinium macrocarpon HOM05D002134 ORTHO05D003893 2.3e-17 91.7 66 71.2
ClCG05G019120 Citrullus lanatus HOM05D002134 ORTHO05D003893 3.0e-17 91.3 63 71.4
MBI16_g35645_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D003893 4.0e-17 90.9 64 67.2
MBI16_g36971_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D003893 4.0e-17 90.9 64 67.2
Sed0018900 Sechium edule HOM05D002134 ORTHO05D003893 4.0e-17 90.9 63 71.4
arahy.Tifrunner.gnm1.ann1.19G7CF Arachis hypogaea HOM05D002134 ORTHO05D003893 5.2e-17 90.5 65 70.8
arahy.Tifrunner.gnm1.ann1.F0DT7Y Arachis hypogaea HOM05D002134 ORTHO05D003893 5.2e-17 90.5 65 70.8
Lj5g0004004 Lotus japonicus HOM05D002134 ORTHO05D003893 5.2e-17 90.5 64 73.4
Actinidia15314 Actinidia chinensis HOM05D000207 ORTHO05D001482 6.8e-17 90.1 63 69.8
MELO3C003853.2 Cucumis melo HOM05D002134 ORTHO05D003893 6.8e-17 90.1 63 69.8
CsaV3_3G045020 Cucumis sativus L. HOM05D002134 ORTHO05D003893 6.8e-17 90.1 63 69.8
FvH4_2g39980 Fragaria vesca HOM05D002134 ORTHO05D003893 6.8e-17 90.1 63 73.0
Manes.18G028300 Manihot esculenta HOM05D002134 ORTHO05D003893 6.8e-17 90.1 64 67.2
RcHm_v2.0_Chr6g0300771 Rosa chinensis HOM05D002134 ORTHO05D003893 6.8e-17 90.1 63 73.0
PGR083G0986 Punica granatum HOM05D002134 ORTHO05D003893 8.9e-17 89.7 63 69.8
Manes.05G161500 Manihot esculenta HOM05D002134 ORTHO05D003893 1.2e-16 89.4 64 70.3
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.5e-16 89.0 63 71.4
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.5e-16 89.0 63 71.4
FAN27G0841 Fragaria x ananassa HOM05D002134 ORTHO05D003893 1.5e-16 89.0 63 71.4
Cc10_g03050 Coffea canephora HOM05D002134 ORTHO05D003893 2.0e-16 88.6 63 66.7
Rhsim06G0034800 Rhododendron simsii HOM05D002134 ORTHO05D003893 2.0e-16 88.6 66 69.7
Gohir.A06G010800 Gossypium hirsutum HOM05D002134 ORTHO05D003893 2.6e-16 88.2 63 69.8
Gohir.D06G008200 Gossypium hirsutum HOM05D002134 ORTHO05D003893 2.6e-16 88.2 63 69.8
Gorai.010G010900 Gossypium raimondii HOM05D002134 ORTHO05D003893 2.6e-16 88.2 63 69.8
Hma1.2p1_0203F.1_g086480 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 2.6e-16 88.2 63 69.8
SalBow7G2089 Salvia bowleyana HOM05D002134 ORTHO05D003893 2.6e-16 88.2 64 67.2
Duzib116G0461 Durio zibethinus HOM05D002134 ORTHO05D003893 3.4e-16 87.8 63 69.8
Phvul.001G015300 Phaseolus vulgaris HOM05D002134 ORTHO05D003893 3.4e-16 87.8 64 67.2
Sp2g07710 Schrenkiella parvula HOM05D002134 ORTHO05D003893 3.4e-16 87.8 64 68.8
CARHR036260 Cardamine hirsuta HOM05D002134 ORTHO05D003893 4.4e-16 87.4 64 65.6
VMungo0647G1701 Vigna mungo HOM05D002134 ORTHO05D003893 4.4e-16 87.4 64 67.2
CSS0002761 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D003893 5.7e-16 87.0 63 68.3
CSS0042168 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D003893 7.5e-16 86.7 64 67.2
Ciclev10002450m.g Citrus clementina HOM05D002134 ORTHO05D003893 7.5e-16 86.7 65 69.2
Gohir.A05G195200 Gossypium hirsutum HOM05D002134 ORTHO05D003893 7.5e-16 86.7 63 65.1
BcaC03g16545 Brassica carinata HOM05D002134 ORTHO05D003893 9.8e-16 86.3 64 67.2
C02p43630 Brassica napus HOM05D002134 ORTHO05D003893 9.8e-16 86.3 64 67.2
Gohir.D05G198400 Gossypium hirsutum HOM05D002134 ORTHO05D003893 9.8e-16 86.3 63 65.1
Gorai.009G203500 Gossypium raimondii HOM05D002134 ORTHO05D003893 9.8e-16 86.3 63 65.1
Prupe.1G381300 Prunus persica HOM05D002134 ORTHO05D003893 9.8e-16 86.3 64 67.2
Duzib093G1509 Durio zibethinus HOM05D002134 ORTHO05D003893 1.3e-15 85.9 63 66.7
BcaB07g30598 Brassica carinata HOM05D002134 ORTHO05D003893 1.7e-15 85.5 64 67.2
A02p27600 Brassica napus HOM05D002134 ORTHO05D003893 1.7e-15 85.5 64 67.2
BolC2t10405H Brassica oleracea HOM05D002134 ORTHO05D003893 1.7e-15 85.5 64 67.2
BraA02t07793Z Brassica rapa HOM05D002134 ORTHO05D003893 1.7e-15 85.5 64 67.2
CiPaw.16G055600 Carya illinoinensis HOM05D002134 ORTHO05D003893 1.7e-15 85.5 66 68.2
Ca_13347_v3 Cicer arietinum L. HOM05D002134 ORTHO05D003893 1.7e-15 85.5 65 67.7
QL02p007979 Quercus lobata HOM05D002134 ORTHO05D003893 1.7e-15 85.5 66 65.2
BcaC02g10786 Brassica carinata HOM05D002134 ORTHO05D003893 2.2e-15 85.1 64 65.6
C04p25100 Brassica napus HOM05D002134 ORTHO05D003893 2.2e-15 85.1 64 65.6
BolC4t24014H Brassica oleracea HOM05D002134 ORTHO05D003893 2.2e-15 85.1 64 65.6
Nitab4.5_0003783g0010 Nicotiana tabacum HOM05D002134 ORTHO05D003893 2.2e-15 85.1 64 64.1
Solyc04g080190.3 Solanum lycopersicum HOM05D002134 ORTHO05D003893 2.2e-15 85.1 63 66.7
Sopen04g033780 Solanum pennellii HOM05D002134 ORTHO05D003893 2.2e-15 85.1 63 66.7
PGSC0003DMG400005143 Solanum tuberosum HOM05D002134 ORTHO05D003893 2.2e-15 85.1 63 66.7
Migut.C00709 Erythranthe guttata HOM05D002134 ORTHO05D003893 2.8e-15 84.7 64 65.6
MSTRG.25160 Avicennia marina HOM05D002134 ORTHO05D003893 3.7e-15 84.3 64 64.1
Carub.0001s3559 Capsella rubella HOM05D002134 ORTHO05D003893 3.7e-15 84.3 63 63.5
CARHR181060 Cardamine hirsuta HOM05D002134 ORTHO05D003893 3.7e-15 84.3 63 66.7
Eucgr.F01905 Eucalyptus grandis HOM05D002134 ORTHO05D003893 3.7e-15 84.3 63 63.5
Glyma.14G076000 Glycine max HOM05D002134 ORTHO05D003893 3.7e-15 84.3 64 64.1
TAR381G0714 Trochodendron aralioides HOM05D002134 ORTHO05D003893 3.7e-15 84.3 63 63.5
Carub.0008s0579 Capsella rubella HOM05D002134 ORTHO05D003893 4.9e-15 84.0 63 65.1
Thhalv10003270m.g Eutrema salsugineum HOM05D002134 ORTHO05D003893 4.9e-15 84.0 63 65.1
Hma1.2p1_0400F.1_g144615 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 4.9e-15 84.0 64 62.5
THA.LOC104814160 Tarenaya hassleriana HOM05D002134 ORTHO05D003893 6.3e-15 83.6 63 66.7
HPP92_007877 Vanilla planifolia HOM05D002134 ORTHO05D003893 6.3e-15 83.6 63 63.5
HPP92_007892 Vanilla planifolia HOM05D002134 ORTHO05D003893 6.3e-15 83.6 63 63.5
Aqoxy6G01056 Aquilegia oxysepala HOM05D002134 ORTHO05D003893 8.3e-15 83.2 65 63.1
Lalb_Chr22g0355501 Lupinus albus HOM05D002134 ORTHO05D003893 8.3e-15 83.2 64 64.1
A06p48130 Brassica napus HOM05D002134 ORTHO05D003893 1.1e-14 82.8 63 65.1
BraA06t27682Z Brassica rapa HOM05D002134 ORTHO05D003893 1.1e-14 82.8 63 65.1
DCAR_019525 Daucus carota HOM05D002134 ORTHO05D003893 1.1e-14 82.8 64 59.4
Glyma.09G114000 Glycine max HOM05D002134 ORTHO05D003893 1.1e-14 82.8 64 62.5
MD08G1033600 Malus domestica HOM05D002134 ORTHO05D003893 1.1e-14 82.8 63 66.7
Nitab4.5_0000110g0550 Nicotiana tabacum HOM05D002134 ORTHO05D003893 1.1e-14 82.8 64 62.5
AT1G45170 Arabidopsis thaliana HOM05D002134 ORTHO05D003893 1.4e-14 82.4 64 60.9
BcaC06g31735 Brassica carinata HOM05D002134 ORTHO05D003893 1.4e-14 82.4 63 65.1
MD15G1030300 Malus domestica HOM05D002134 ORTHO05D003893 1.4e-14 82.4 63 66.7
PSO541G3855 Papaver somniferum HOM05D002134 ORTHO05D003893 1.4e-14 82.4 64 60.9
Aa31LG9G13080 Aethionema arabicum HOM05D002134 ORTHO05D003893 1.8e-14 82.0 64 59.4
HanXRQChr02g0042031 Helianthus annuus HOM05D002134 ORTHO05D003893 1.8e-14 82.0 65 64.6
SGA_v2.0_scaffold48G18076 Striga asiatica HOM05D003992 ORTHO05D004329 1.8e-14 82.0 64 60.9
Lalb_Chr14g0369171 Lupinus albus HOM05D002134 ORTHO05D003893 2.4e-14 81.6 64 62.5
Cfa018139 Carpinus fangiana HOM05D002134 ORTHO05D003893 3.1e-14 81.3 66 63.6
Oeu009869.1 Olea europaea HOM05D002134 ORTHO05D003893 3.1e-14 81.3 63 63.5
THA.LOC104822842 Tarenaya hassleriana HOM05D002134 ORTHO05D003893 4.1e-14 80.9 64 62.5
EL10Ac1g01799 Beta vulgaris HOM05D002134 ORTHO05D003893 9.2e-14 79.7 67 59.7
ECA247G1990 Erigeron canadensis HOM05D002134 ORTHO05D003893 9.2e-14 79.7 66 59.1
Lj4A785T30 Lonicera japonica HOM05D002134 ORTHO05D003893 9.2e-14 79.7 63 61.9
Hma1.2p1_0469F.1_g159180 Hydrangea macrophylla HOM05D002134 ORTHO05D003893 1.2e-13 79.3 63 63.5
Medtr1g022050 Medicago truncatula HOM05D002134 ORTHO05D003893 1.2e-13 79.3 64 62.5
AT5G42960 Arabidopsis thaliana HOM05D002134 ORTHO05D003893 1.6e-13 79.0 63 60.3
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.6e-13 79.0 66 62.1
Oeu002842.1 Olea europaea HOM05D002134 ORTHO05D003893 1.6e-13 79.0 63 58.7
Psat6g006400 Pisum sativum HOM05D002134 ORTHO05D003893 2.7e-13 78.2 64 64.1
AL1G52820 Arabidopsis lyrata HOM05D002134 ORTHO05D003893 3.5e-13 77.8 63 58.7
AL8G17810 Arabidopsis lyrata HOM05D002134 ORTHO05D003893 3.5e-13 77.8 63 58.7
CDE01G0655 Ceratophyllum demersum HOM05D002134 ORTHO05D003893 3.5e-13 77.8 63 55.6
CDE02G2135 Ceratophyllum demersum HOM05D002134 ORTHO05D003893 3.5e-13 77.8 63 55.6
Lsat_1_v5_gn_1_17601 Lactuca sativa HOM05D002134 ORTHO05D003893 3.5e-13 77.8 65 61.5
unitig_26.g9707 Utricularia gibba HOM05D002134 ORTHO05D003893 3.5e-13 77.8 63 60.3
CiPaw.15G075900 Carya illinoinensis HOM05D002134 ORTHO05D003893 4.5e-13 77.4 68 60.3
Nitab4.5_0000790g0140 Nicotiana tabacum HOM05D002134 ORTHO05D003893 4.5e-13 77.4 66 60.6
COL.COLO4_26339 Corchorus olitorius HOM05D002134 ORTHO05D003893 7.8e-13 76.6 56 67.9
Dinv26817 Davidia involucrata HOM05D002134 ORTHO05D003893 7.8e-13 76.6 64 54.7
Thhalv10012286m.g Eutrema salsugineum HOM05D002134 ORTHO05D003893 7.8e-13 76.6 64 54.7
Peaxi162Scf00690g00121 Petunia axillaris HOM05D002134 ORTHO05D003893 7.8e-13 76.6 65 61.5
Hund17648 Selenicereus undatus HOM05D002134 ORTHO05D003893 7.8e-13 76.6 68 61.8
Lj2C449G12 Lonicera japonica HOM05D002134 ORTHO05D003893 1.0e-12 76.3 66 57.6
Duzib041G0269 Durio zibethinus HOM05D002134 ORTHO05D003893 1.3e-12 75.9 63 57.1
Gohir.A03G078300 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.3e-12 75.9 63 63.5
Gohir.D02G094400 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.3e-12 75.9 63 63.5
Gorai.005G107300 Gossypium raimondii HOM05D002134 ORTHO05D003893 1.7e-12 75.5 63 63.5
Lalb_Chr24g0399021 Lupinus albus HOM05D002134 ORTHO05D003893 2.3e-12 75.1 64 57.8
AUR62038767 Chenopodium quinoa HOM05D002134 ORTHO05D003893 5.0e-12 73.9 67 55.2
AUR62038823 Chenopodium quinoa HOM05D002134 ORTHO05D003893 5.0e-12 73.9 67 55.2
Nitab4.5_0001827g0130 Nicotiana tabacum HOM05D002134 ORTHO05D003893 8.6e-12 73.2 64 56.2
Actinidia19173 Actinidia chinensis HOM05D002134 ORTHO05D003893 1.1e-11 72.8 63 58.7
DCAR_020967 Daucus carota HOM05D002134 ORTHO05D003893 1.9e-11 72.0 64 54.7
DCAR_020968 Daucus carota HOM05D002134 ORTHO05D003893 1.9e-11 72.0 64 54.7
CANSAT25G1534 Cannabis sativa HOM05D002134 ORTHO05D003893 2.5e-11 71.6 64 54.7
Cc07_g09280 Coffea canephora HOM05D002134 ORTHO05D003893 2.5e-11 71.6 63 54.0
Rhsim08G0113900 Rhododendron simsii HOM05D002134 ORTHO05D003893 3.3e-11 71.2 62 58.1
Sopen12g030980 Solanum pennellii HOM05D002134 ORTHO05D003893 4.3e-11 70.9 68 54.4
Solyc12g089100.2 Solanum lycopersicum HOM05D002134 ORTHO05D003893 9.5e-11 69.7 68 52.9
Zm00001eb064890 Zea mays HOM05D002134 ORTHO05D003893 9.5e-11 69.7 60 53.3
Mapoly0013s0017 Marchantia polymorpha HOM05D002134 ORTHO05D003893 1.2e-10 69.3 62 51.6
ATR0733G028 Amborella trichopoda HOM05D002134 ORTHO05D003893 1.6e-10 68.9 65 49.2
GSVIVG01009688001 Vitis vinifera HOM05D002134 ORTHO05D003893 2.8e-10 68.2 65 52.3
PGSC0003DMG401015455 Solanum tuberosum HOM05D002134 ORTHO05D003893 3.6e-10 67.8 68 51.5
SEGI_08825 Sequoiadendron giganteum HOM05D002134 ORTHO05D003893 4.7e-10 67.4 62 51.6
PGR031G0525 Punica granatum HOM05D002134 ORTHO05D003893 6.1e-10 67.0 64 54.7
Hund16584 Selenicereus undatus HOM05D002134 ORTHO05D003893 1.0e-09 66.2 64 48.4
vmacro17851 Vaccinium macrocarpon HOM05D002134 ORTHO05D003893 2.3e-09 65.1 58 55.2
Cc04_g13560 Coffea canephora HOM05D002134 ORTHO05D003893 5.2e-09 63.9 58 50.0
HanXRQChr14g0440381 Helianthus annuus HOM05D002134 ORTHO05D003893 6.8e-09 63.5 63 47.6
Os03g0855600 Oryza sativa ssp. japonica HOM05D002134 ORTHO05D003893 6.8e-09 63.5 62 51.6
Sc15g0006880 Simmondsia chinensis HOM05D002134 ORTHO05D003893 6.8e-09 63.5 72 48.6
Gohir.D05G261800 Gossypium hirsutum HOM05D002134 ORTHO05D003893 1.5e-08 62.4 57 54.4
Gorai.009G273700 Gossypium raimondii HOM05D002134 ORTHO05D003893 1.5e-08 62.4 57 54.4
AUR62007996 Chenopodium quinoa HOM05D002134 ORTHO05D003893 2.0e-08 62.0 64 48.4
Gohir.A05G259900 Gossypium hirsutum HOM05D002134 ORTHO05D003893 2.6e-08 61.6 57 54.4
Lsat_1_v5_gn_2_76680 Lactuca sativa HOM05D002134 ORTHO05D003893 2.6e-08 61.6 63 47.6
TPR.G29753 Trifolium pratense HOM05D002134 ORTHO05D003893 2.6e-08 61.6 81 45.7
CAN.G1126.43 Capsicum annuum HOM05D002134 ORTHO05D003893 4.4e-08 60.8 45 64.4
ECA238G4749 Erigeron canadensis HOM05D002134 ORTHO05D003893 9.8e-08 59.7 64 46.9
PGSC0003DMG400012687 Solanum tuberosum HOM05D002134 ORTHO05D003893 9.8e-08 59.7 64 42.2
Pp3c9_25170 Physcomitrium patens HOM05D002134 ORTHO05D003893 1.7e-07 58.9 66 42.4
EL10Ac6g14922 Beta vulgaris HOM05D002134 ORTHO05D003893 2.2e-07 58.5 64 43.8
AUR62003177 Chenopodium quinoa HOM05D002134 ORTHO05D003893 2.9e-07 58.2 65 44.6
Pp3c15_24440 Physcomitrium patens HOM05D002134 ORTHO05D003893 4.9e-07 57.4 66 43.9
SMO239G0158 Selaginella moellendorffii HOM05D002134 ORTHO05D003893 4.9e-07 57.4 62 46.8
PSO528G0218 Papaver somniferum HOM05D002134 ORTHO05D003893 2.4e-06 55.1 64 48.4
Peaxi162Scf00064g00434 Petunia axillaris HOM05D002134 ORTHO05D003893 7.0e-06 53.5 72 47.2


User provided reference genes

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