Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.2e-55 219.5 109 100.0
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 5.0e-25 117.9 91 72.5
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 7.8e-18 94.0 91 57.1
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 7.8e-18 94.0 79 65.8
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 7.8e-18 94.0 79 67.1
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.0e-17 93.6 77 66.2
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.0e-17 93.6 77 66.2
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 2.3e-17 92.4 77 66.2
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 2.9e-17 92.0 76 65.8
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 2.9e-17 92.0 79 64.6
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 3.8e-17 91.7 85 58.8
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 5.0e-17 91.3 86 57.0
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 5.0e-17 91.3 95 55.8
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 5.0e-17 91.3 74 66.2
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 6.6e-17 90.9 70 64.3
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 6.6e-17 90.9 86 55.8
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 6.6e-17 90.9 86 55.8
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 6.6e-17 90.9 86 55.8
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 1.1e-16 90.1 86 55.8
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 1.1e-16 90.1 76 63.2
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 1.1e-16 90.1 79 62.0
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 1.5e-16 89.7 82 61.0
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 1.9e-16 89.4 77 64.9
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 2.5e-16 89.0 80 56.2
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 2.5e-16 89.0 76 63.2
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 2.5e-16 89.0 86 54.7
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 2.5e-16 89.0 77 62.3
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 3.3e-16 88.6 76 63.2
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 3.3e-16 88.6 84 54.8
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 4.3e-16 88.2 78 61.5
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 5.6e-16 87.8 79 60.8
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 9.5e-16 87.0 76 61.8
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 1.6e-15 86.3 78 65.4
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 1.6e-15 86.3 86 62.8
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 1.6e-15 86.3 79 60.8
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 2.8e-15 85.5 92 51.1
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 3.6e-15 85.1 88 61.4
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 3.6e-15 85.1 96 53.1
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 4.7e-15 84.7 88 60.2
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 6.1e-15 84.3 89 53.9
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 8.0e-15 84.0 79 55.7
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 8.0e-15 84.0 76 59.2
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 2.3e-14 82.4 79 54.4
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 2.3e-14 82.4 79 54.4
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 3.0e-14 82.0 92 51.1
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 3.0e-14 82.0 73 61.6
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 5.2e-14 81.3 87 50.6
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 5.2e-14 81.3 81 51.9
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 5.2e-14 81.3 86 51.2
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 6.8e-14 80.9 87 52.9
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 6.8e-14 80.9 64 67.2
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 8.9e-14 80.5 87 52.9
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 1.5e-13 79.7 88 51.1
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.0e-13 79.3 80 61.2
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 2.0e-13 79.3 76 59.2
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 2.6e-13 79.0 88 52.3
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 2.6e-13 79.0 88 52.3
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 2.6e-13 79.0 93 49.5
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 3.4e-13 78.6 77 58.4
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 4.4e-13 78.2 78 60.3
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 4.4e-13 78.2 79 60.8
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 5.8e-13 77.8 88 50.0
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 5.8e-13 77.8 80 60.0
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 7.5e-13 77.4 87 51.7
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 7.5e-13 77.4 79 60.8
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 9.8e-13 77.0 86 45.3
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 1.7e-12 76.3 76 56.6
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 2.2e-12 75.9 87 48.3
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 2.2e-12 75.9 103 48.5
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 2.2e-12 75.9 78 62.8
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 3.7e-12 75.1 98 46.9
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 4.9e-12 74.7 77 55.8
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 1.4e-11 73.2 92 47.8
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 3.2e-11 72.0 85 49.4
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 4.1e-11 71.6 75 57.3
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 5.4e-11 71.2 83 53.0
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 5.4e-11 71.2 78 55.1
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 5.4e-11 71.2 88 47.7
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 1.2e-10 70.1 86 50.0
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 1.6e-10 69.7 79 50.6
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 2.7e-10 68.9 54 70.4
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 2.7e-10 68.9 55 61.8
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 3.5e-10 68.6 77 53.2
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 4.6e-10 68.2 58 55.2
Rhsim09G0001400 Rhododendron simsii HOM05D001561 ORTHO05D001715 4.6e-10 68.2 81 54.3
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 6.0e-10 67.8 77 50.6
Rhsim08G0179200 Rhododendron simsii HOM05D005509 ORTHO05D006411 7.8e-10 67.4 85 57.6
BcaC02g10727 Brassica carinata HOM05D005509 ORTHO05D006411 1.0e-09 67.0 69 52.2
C04p27060 Brassica napus HOM05D005509 ORTHO05D006411 1.0e-09 67.0 69 52.2
BolC4t24086H Brassica oleracea HOM05D005509 ORTHO05D006411 1.0e-09 67.0 69 52.2
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 1.7e-09 66.2 74 51.4
BcaB06g27450 Brassica carinata HOM05D005509 ORTHO05D006411 1.7e-09 66.2 72 52.8
Rhsim08G0176800 Rhododendron simsii HOM05D005509 ORTHO05D006411 1.7e-09 66.2 85 56.5
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 2.3e-09 65.9 87 48.3
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 3.0e-09 65.5 88 50.0
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 3.0e-09 65.5 82 50.0
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 3.9e-09 65.1 79 53.2
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 5.0e-09 64.7 93 44.1
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 5.0e-09 64.7 90 47.8
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 6.6e-09 64.3 55 58.2
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 3.3e-08 62.0 82 48.8
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 5.6e-08 61.2 56 58.9
BcaNung05648 Brassica carinata HOM05D005509 ORTHO05D006411 7.3e-08 60.8 51 58.8
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 7.3e-08 60.8 64 50.0
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 7.3e-08 60.8 77 50.6
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 9.5e-08 60.5 57 57.9
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.5e-08 60.5 57 57.9
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.5e-08 60.5 57 57.9
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.5e-08 60.5 57 57.9
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 9.5e-08 60.5 57 57.9
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 1.2e-07 60.1 55 56.4
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 8.0e-07 57.4 75 49.3
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 1.1e-06 57.0 75 45.3
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 5.2e-06 54.7 91 40.7


User provided reference genes

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