Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05010 Nelumbo nucifera HOM05D001822 ORTHO05D001744 6.8e-97 357.5 196 100.0
MBI19_g34083_MAGBIO Magnolia biondii HOM05D001822 ORTHO05D001744 5.9e-08 62.0 37 86.5
Nn4g24312 Nelumbo nucifera HOM05D001822 ORTHO05D001744 5.9e-08 62.0 37 89.2
TAR629G1781 Trochodendron aralioides HOM05D001822 ORTHO05D001744 5.9e-08 62.0 37 86.5
ATR0564G376 Amborella trichopoda HOM05D001822 ORTHO05D001744 1.0e-07 61.2 37 86.5
TAR622G1150 Trochodendron aralioides HOM05D001822 ORTHO05D001744 1.3e-07 60.8 37 83.8
TAR622G1442 Trochodendron aralioides HOM05D000655 ORTHO05D001166 1.3e-07 60.8 37 83.8
CSS0017279 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 1.7e-07 60.5 37 83.8
CSS0030325 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 1.7e-07 60.5 37 83.8
Hma1.2p1_0089F.1_g045480 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 2.9e-07 59.7 37 83.8
Hma1.2p1_2277F.1_g318650 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 2.9e-07 59.7 37 83.8
TAR371G0055 Trochodendron aralioides HOM05D001822 ORTHO05D001744 3.8e-07 59.3 37 81.1
TAR371G0336 Trochodendron aralioides HOM05D001822 ORTHO05D001744 3.8e-07 59.3 37 81.1
Dinv28073 Davidia involucrata HOM05D001822 ORTHO05D001744 6.5e-07 58.5 37 81.1
Sed0017896 Sechium edule HOM05D001822 ORTHO05D001744 6.5e-07 58.5 37 81.1
GSVIVG01011676001 Vitis vinifera HOM05D001822 ORTHO05D001744 6.5e-07 58.5 37 81.1
ClCG07G005860 Citrullus lanatus HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
MELO3C026427.2 Cucumis melo HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
Nn3g18333 Nelumbo nucifera HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
Oeu032317.1 Olea europaea HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 83.8
QL10p031259 Quercus lobata HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
Sed0016512 Sechium edule HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
SEGI_21602 Sequoiadendron giganteum HOM05D001822 ORTHO05D001744 8.5e-07 58.2 37 81.1
Actinidia17207 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
CiPaw.15G145600 Carya illinoinensis HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 78.4
CsaV3_5G037070 Cucumis sativus L. HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 78.4
Dinv19041 Davidia involucrata HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Lsat_1_v5_gn_2_68860 Lactuca sativa HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 75.7
Lalb_Chr16g0387671 Lupinus albus HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 75.7
Nn5g30874 Nelumbo nucifera HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 83.8
Nitab4.5_0000574g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Oeu036618.1 Olea europaea HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Prupe.1G331700 Prunus persica HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 78.4
Rhsim08G0019200 Rhododendron simsii HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Solyc04g014490.1 Solanum lycopersicum HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Sopen04g006620 Solanum pennellii HOM05D001822 ORTHO05D001744 1.1e-06 57.8 37 81.1
Ah.02g127850 Amaranthus hybridus HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
EL10Ac6g14153 Beta vulgaris HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 78.4
AUR62014159 Chenopodium quinoa HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 78.4
AUR62038502 Chenopodium quinoa HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 78.4
COL.COLO4_16568 Corchorus olitorius HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Duzib268G0005 Durio zibethinus HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Gohir.A01G148518 Gossypium hirsutum HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Gohir.D01G141200 Gossypium hirsutum HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Gohir.D02G141400 Gossypium hirsutum HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Gorai.002G173500 Gossypium raimondii HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Gorai.N021300 Gossypium raimondii HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Hma1.2p1_0158F.1_g070100 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 78.4
Medtr8g104980 Medicago truncatula HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 75.7
Nitab4.5_0005102g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 81.1
Psat7g009160 Pisum sativum HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 75.7
TPR.G32709 Trifolium pratense HOM05D001822 ORTHO05D001744 1.4e-06 57.4 37 75.7
MSTRG.15664 Avicennia marina HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 81.1
BcaC03g18536 Brassica carinata HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
BcaC03g18537 Brassica carinata HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
BcaNung00423 Brassica carinata HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
A02p04000 Brassica napus HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
C02p08810 Brassica napus HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
BraA02t05363Z Brassica rapa HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
CANSAT01G1975 Cannabis sativa HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
Ca_17288_v3 Cicer arietinum L. HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
Thhalv10015011m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
Glyma.08G042700 Glycine max HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
Lj4g0007453 Lotus japonicus HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
MD13G1029700 Malus domestica HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
MD16G1020500 Malus domestica HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
Phvul.002G319800 Phaseolus vulgaris HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
PGR083G0963 Punica granatum HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 78.4
PGR102G0630 Punica granatum HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 78.4
PGR119G2246 Punica granatum HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
VMungo0251G1677 Vigna mungo HOM05D001822 ORTHO05D001744 1.9e-06 57.0 37 75.7
AL6G28240 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
AT5G17190 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
BcaB04g19373 Brassica carinata HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
Carub.0006s1538 Capsella rubella HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
CARHR196020 Cardamine hirsuta HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
Cfa015004 Carpinus fangiana HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 78.4
Duzib251G0670 Durio zibethinus HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 78.4
Migut.K00913 Erythranthe guttata HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 78.4
FvH4_4g33810 Fragaria vesca HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
FAN12G2787 Fragaria x ananassa HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
FAN17G2319 Fragaria x ananassa HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
FAN22G2215 Fragaria x ananassa HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
Glyma.05G235300 Glycine max HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
Gohir.A03G117800 Gossypium hirsutum HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 78.4
Lalb_Chr09g0330961 Lupinus albus HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 73.0
RcHm_v2.0_Chr4g0443321 Rosa chinensis HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
THA.LOC104802914 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
THA.LOC104827222 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 75.7
Thecc.02G290800 Theobroma cacao HOM05D001822 ORTHO05D001744 2.5e-06 56.6 37 78.4
Atru.chr11.523 Acer truncatum HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 75.7
Aa31LG5G13640 Aethionema arabicum HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
BcaC05g30525 Brassica carinata HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
A05p44030 Brassica napus HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
C05p63650 Brassica napus HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
BolC5t35034H Brassica oleracea HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
BraA03t12495Z Brassica rapa HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
BraSC90t46708Z Brassica rapa HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 73.0
CSS0022368 Camellia sinensis var. sinensis HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
Cfa019616 Carpinus fangiana HOM05D001822 ORTHO05D001744 3.2e-06 56.2 35 77.1
HanXRQChr05g0147251 Helianthus annuus HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
HanXRQChr07g0189141 Helianthus annuus HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
Os02g0734900 Oryza sativa ssp. japonica HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
Sabra08G0102200 Salix brachista HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 75.7
SalBow5G0652 Salvia bowleyana HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
Sc09g0001670 Simmondsia chinensis HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
SGA_v2.0_scaffold115G32121 Striga asiatica HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
Zm00001eb253800 Zea mays HOM05D001822 ORTHO05D001744 3.2e-06 56.2 37 78.4
AL3G12770 Arabidopsis lyrata HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
AT3G03160 Arabidopsis thaliana HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
Carub.0003s0231 Capsella rubella HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
CARHR077180 Cardamine hirsuta HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
CiPaw.06G050100 Carya illinoinensis HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 75.7
Eucgr.B02953 Eucalyptus grandis HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 75.7
Thhalv10021756m.g Eutrema salsugineum HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
Hma1.2p1_0471F.1_g159570 Hydrangea macrophylla HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 75.7
Manes.17G082300 Manihot esculenta HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 75.7
Nitab4.5_0000201g0080 Nicotiana tabacum HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 78.4
Potri.008G133600 Populus trichocarpa HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 75.7
Sp3g02200 Schrenkiella parvula HOM05D001822 ORTHO05D001744 4.2e-06 55.8 37 73.0
Sp7g03080 Schrenkiella parvula HOM05D001822 ORTHO05D001744 4.2e-06 55.8 40 65.0
Aqoxy3G04080 Aquilegia oxysepala HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 75.7
BcaC01g04405 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-06 55.5 35 74.3
BcaC01g04410 Brassica carinata HOM05D001822 ORTHO05D001744 5.5e-06 55.5 35 74.3
C03p40490 Brassica napus HOM05D001822 ORTHO05D001744 5.5e-06 55.5 35 74.3
BolC3t16313H Brassica oleracea HOM05D001822 ORTHO05D001744 5.5e-06 55.5 35 74.3
Cc07_g13340 Coffea canephora HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 78.4
Haze_18863 Corylus avellana HOM05D001822 ORTHO05D001744 5.5e-06 55.5 35 74.3
ECA238G0297 Erigeron canadensis HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 75.7
Sp6g27040 Schrenkiella parvula HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 70.3
PGSC0003DMG400023621 Solanum tuberosum HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 78.4
THA.LOC104820873 Tarenaya hassleriana HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 73.0
unitig_32.g11795 Utricularia gibba HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 75.7
Zm00001eb190330 Zea mays HOM05D001822 ORTHO05D001744 5.5e-06 55.5 37 73.0
Aa31LG11G12470 Aethionema arabicum HOM05D001822 ORTHO05D001744 7.2e-06 55.1 37 73.0
A03p33230 Brassica napus HOM05D001822 ORTHO05D001744 7.2e-06 55.1 35 74.3
Solyc11g011010.1 Solanum lycopersicum HOM05D001822 ORTHO05D001744 7.2e-06 55.1 37 78.4
Sopen11g005770 Solanum pennellii HOM05D001822 ORTHO05D001744 7.2e-06 55.1 37 78.4
PGSC0003DMG400015665 Solanum tuberosum HOM05D001822 ORTHO05D001744 7.2e-06 55.1 37 78.4
CiPaw.06G050000 Carya illinoinensis HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 73.0
Ciclev10018373m.g Citrus clementina HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 67.6
Haze_10904 Corylus avellana HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 75.7
Haze_10909 Corylus avellana HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 75.7
Nitab4.5_0008972g0010 Nicotiana tabacum HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 78.4
QL03p035034 Quercus lobata HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 73.0
Rhsim09G0038300 Rhododendron simsii HOM05D001822 ORTHO05D001744 9.4e-06 54.7 37 75.7


User provided reference genes

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