Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 0.0e+00 1186.8 581 100.0
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.5e-144 517.3 535 54.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.9e-108 396.4 540 41.9
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 1.8e-60 238.0 571 32.0
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.1e-59 235.3 526 33.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.2e-54 217.2 506 33.6
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 7.2e-54 216.1 521 30.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.7e-50 204.9 525 30.5
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 2.4e-49 201.1 520 30.8
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 4.1e-49 200.3 540 32.6
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.5e-46 191.8 539 31.0
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.9e-46 191.4 519 29.9
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.5e-46 191.0 519 29.7
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.6e-45 188.3 510 29.0
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.0e-44 185.7 517 30.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 4.0e-44 183.7 511 30.9
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 5.2e-44 183.3 509 29.1
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-39 168.7 519 29.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 8.6e-39 166.0 537 30.5
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.6e-37 161.8 524 28.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.1e-37 161.4 516 27.9
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 6.1e-37 159.8 530 27.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 4.0e-36 157.1 536 27.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-35 155.6 561 29.1
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.2e-34 151.4 530 27.9
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-33 148.7 515 27.0
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 5.4e-33 146.7 529 28.4
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.7e-32 144.4 521 26.9
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 4.5e-32 143.7 525 29.3
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.0e-31 142.5 519 27.7
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 3.9e-31 140.6 523 28.1
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.5e-30 137.9 552 27.2
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.4e-28 132.1 568 26.4
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 6.8e-28 129.8 516 25.2
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.0e-27 128.3 501 26.7
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 5.8e-27 126.7 540 24.8
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 9.8e-27 125.9 540 25.6
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.2e-26 124.8 516 26.6
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.7e-26 124.0 239 34.3
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 6.4e-26 123.2 543 25.0
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 8.3e-26 122.9 541 25.7
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.1e-25 122.5 538 25.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.4e-25 121.3 521 27.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 2.4e-25 121.3 140 46.4
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 9.2e-25 119.4 432 27.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.6e-24 118.6 399 28.8
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.0e-23 115.9 343 31.8
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 1.5e-22 112.1 521 25.9
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.5e-22 111.3 208 35.1
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 3.3e-22 110.9 518 26.1
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.3e-22 110.5 517 24.8
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-21 108.2 262 33.6
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.7e-21 107.1 521 25.1
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 1.4e-20 105.5 411 28.0
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 4.0e-20 104.0 504 25.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 5.2e-20 103.6 519 25.0
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.8e-19 99.4 197 35.5
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.9e-17 95.1 200 36.5
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.4e-17 94.7 139 42.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 4.6e-16 90.5 193 35.2
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.7e-15 88.6 521 25.5
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.3e-15 88.2 203 35.0
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 3.9e-15 87.4 129 47.3
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 6.6e-15 86.7 513 24.8
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.5e-14 84.7 529 23.1
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.3e-14 84.3 73 57.5
ATR0568G035 Amborella trichopoda HOM05D007001 ORTHO05D005587 7.3e-14 83.2 139 34.5
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 7.3e-14 83.2 528 23.9
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.6e-13 80.9 153 35.3
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 6.2e-13 80.1 529 23.1
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 4.0e-12 77.4 185 31.9
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.2e-12 77.0 363 26.2
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.6e-11 74.7 150 35.3
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 7.6e-11 73.2 365 25.5
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 7.6e-11 73.2 189 34.4
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 9.9e-11 72.8 172 33.7
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 9.9e-11 72.8 188 33.0
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.3e-10 72.4 380 23.9
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.7e-10 70.9 363 25.9
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.1e-09 69.3 365 24.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.4e-09 68.9 125 40.0
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.4e-09 68.2 155 32.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 2.4e-09 68.2 142 36.6
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 7.1e-09 66.6 121 37.2
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.1e-08 65.1 124 35.5


User provided reference genes

Program Settings