Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 4.5e-105 384.8 223 100.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.1e-45 187.6 224 52.7
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.8e-45 186.8 218 50.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.3e-45 186.4 220 50.5
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 4.0e-45 185.7 225 52.9
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.5e-44 183.7 223 55.2
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 3.8e-43 179.1 222 51.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 8.4e-43 177.9 220 57.7
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.1e-42 177.6 220 60.5
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.2e-42 176.0 224 54.9
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 4.1e-42 175.6 219 55.3
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 6.0e-41 171.8 223 48.4
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 7.8e-41 171.4 231 49.8
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 7.8e-41 171.4 231 49.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.9e-40 169.1 178 56.7
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 5.1e-40 168.7 169 66.3
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.1e-39 167.5 202 53.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.6e-39 165.2 223 51.6
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.3e-39 164.9 217 49.8
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 9.6e-39 164.5 195 53.3
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.2e-38 164.1 217 49.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.8e-38 162.9 222 59.0
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.6e-38 162.5 188 52.7
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.7e-38 162.2 223 48.0
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.2e-38 161.8 217 49.8
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.2e-38 161.8 223 47.1
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.4e-37 160.6 194 52.6
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.8e-37 160.2 194 52.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.0e-37 159.1 194 54.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 6.9e-37 158.3 186 55.4
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-36 157.1 197 50.3
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.6e-36 156.4 189 57.7
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.4e-36 156.0 189 57.7
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.4e-36 155.6 225 49.3
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 5.8e-36 155.2 219 47.9
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.3e-35 154.1 220 48.2
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.7e-35 153.7 176 52.3
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.2e-35 153.3 217 47.9
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 3.8e-35 152.5 194 51.5
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 4.9e-35 152.1 198 52.0
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.4e-35 151.8 196 49.5
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 8.4e-35 151.4 232 49.6
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.4e-34 150.6 192 47.9
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-34 149.8 221 45.7
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 4.2e-34 149.1 222 47.3
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.7e-33 146.4 198 50.0
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-32 144.1 193 50.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 3.9e-32 142.5 217 43.8
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 3.9e-32 142.5 174 58.6
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 5.1e-32 142.1 194 49.0
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.5e-31 140.6 222 45.5
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.5e-31 139.8 218 45.0
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.3e-31 139.4 193 46.1
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-31 139.0 193 46.1
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 4.3e-31 139.0 197 49.2
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.3e-30 137.5 237 41.4
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 4.8e-30 135.6 191 46.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 6.2e-30 135.2 177 50.3
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.8e-29 133.7 211 44.1
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 5.3e-29 132.1 149 48.3
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 9.0e-29 131.3 179 50.3
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.5e-28 130.6 204 45.6
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.6e-28 129.8 183 48.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 3.4e-28 129.4 208 42.3
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 3.4e-28 129.4 220 45.5
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.3e-27 127.5 181 49.7
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 2.2e-27 126.7 208 42.3
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.8e-27 125.9 139 54.0
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 6.4e-27 125.2 208 42.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.1e-26 124.4 114 62.3
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 3.2e-26 122.9 208 43.8
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 4.2e-26 122.5 191 46.1
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.2e-26 122.5 184 46.2
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.2e-26 122.5 181 48.6
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 5.4e-26 122.1 197 54.3
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 9.3e-26 121.3 217 46.5
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.2e-25 120.9 240 40.8
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.2e-25 120.9 152 46.7
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.6e-25 120.6 176 54.5
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.6e-25 120.6 219 52.1
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 2.1e-25 120.2 221 41.2
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 3.5e-25 119.4 197 56.9
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 7.9e-25 118.2 210 45.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.0e-24 117.9 182 45.6
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.3e-24 117.5 181 48.1
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 2.3e-24 116.7 198 44.4
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.3e-24 116.7 184 47.3
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.0e-24 116.3 181 43.1
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 5.1e-24 115.5 208 42.3
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 5.1e-24 115.5 208 42.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 6.7e-24 115.2 181 44.2
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 8.7e-24 114.8 80 72.5
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.1e-23 114.4 198 42.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.1e-23 114.4 184 53.3
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.1e-23 114.4 185 49.2
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.9e-23 113.6 153 45.1
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 2.5e-23 113.2 209 40.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 5.6e-23 112.1 203 36.5
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.3e-22 110.9 202 45.5
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.6e-22 110.5 90 65.6
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.6e-22 109.4 89 65.2
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 6.2e-22 108.6 185 40.0
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 6.2e-22 108.6 201 40.8
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 6.2e-22 108.6 182 49.5
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 8.1e-22 108.2 213 39.9
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 8.1e-22 108.2 231 37.2
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.1e-21 107.8 214 39.7
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-21 107.8 197 39.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.8e-21 107.1 195 49.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.8e-21 107.1 219 39.3
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.1e-21 106.3 174 42.5
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.1e-21 106.3 214 40.7
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.1e-21 106.3 172 41.3
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 6.9e-21 105.1 219 46.6
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 5.8e-20 102.1 213 39.4
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 5.8e-20 102.1 213 39.4
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 5.8e-20 102.1 204 49.5
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.2e-19 100.1 165 41.8
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 6.4e-19 98.6 222 36.0
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-18 97.8 175 44.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.2e-18 96.3 211 40.3
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 7.1e-18 95.1 148 45.3
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.1e-18 95.1 109 52.3
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.2e-17 94.4 153 49.0
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.2e-17 94.4 187 41.2
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 4.6e-17 92.4 96 52.1
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.0e-17 92.0 180 40.0
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 7.9e-17 91.7 176 38.1
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.0e-16 91.3 222 36.5
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.3e-16 90.9 103 53.4
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.8e-16 90.5 138 41.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 2.3e-16 90.1 215 36.3
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 3.0e-16 89.7 243 37.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 8.7e-16 88.2 210 35.2
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 9.6e-15 84.7 90 52.2
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 2.8e-14 83.2 136 42.6
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.8e-14 83.2 104 53.8
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 6.9e-13 78.6 183 35.0
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.0e-13 78.2 176 39.8
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.3e-11 74.3 112 42.9
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.7e-11 73.9 73 56.2
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 6.5e-11 72.0 176 35.8
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.2e-10 69.3 187 34.8
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.5e-10 68.9 88 47.7
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.9e-08 62.8 71 54.9
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.5e-07 60.8 99 42.4
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.9e-07 60.5 50 64.0
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.8e-06 56.6 68 50.0
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.8e-06 56.6 68 50.0


User provided reference genes

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