Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.1e-115 419.9 202 100.0
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.4e-81 306.6 204 74.5
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.3e-74 283.5 207 69.6
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.4e-68 263.5 211 65.9
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.2e-67 260.4 203 66.0
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 4.4e-67 258.5 195 68.2
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 5.8e-67 258.1 207 66.2
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 4.9e-66 255.0 204 65.2
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 6.4e-66 254.6 196 63.3
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.1e-65 253.8 209 64.1
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 1.4e-65 253.4 197 66.5
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.4e-65 252.7 208 63.9
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 3.2e-65 252.3 211 64.0
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 7.0e-65 251.1 215 60.5
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.3e-63 246.1 199 61.8
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 3.9e-63 245.4 188 67.0
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 5.0e-63 245.0 201 63.7
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.5e-62 243.4 201 63.7
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 1.5e-62 243.4 201 63.7
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 5.6e-62 241.5 174 67.2
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 7.3e-62 241.1 176 66.5
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.8e-61 239.2 214 60.3
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 4.7e-61 238.4 238 54.6
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.3e-60 236.1 197 61.4
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 5.2e-60 235.0 200 61.5
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 1.2e-59 233.8 193 63.2
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 4.9e-58 228.4 218 58.3
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.4e-58 228.0 206 57.8
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 7.1e-57 224.6 186 59.1
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 1.6e-56 223.4 182 62.6
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 3.5e-56 222.2 205 59.5
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 5.1e-55 218.4 204 57.8
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 8.6e-55 217.6 187 61.5
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 8.6e-55 217.6 172 64.0
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.5e-54 216.1 175 61.7
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 4.3e-54 215.3 211 55.9
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 4.3e-54 215.3 208 55.8
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 5.6e-54 214.9 213 56.3
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 5.6e-54 214.9 216 56.0
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 5.6e-54 214.9 142 71.1
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 5.6e-54 214.9 142 71.1
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.6e-53 213.4 187 59.9
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.6e-53 213.4 179 60.9
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.8e-53 212.6 168 61.3
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 3.6e-53 212.2 186 60.2
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 6.2e-53 211.5 187 59.4
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 8.1e-53 211.1 205 54.6
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 8.1e-53 211.1 174 60.9
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.4e-52 210.3 204 55.4
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 5.2e-52 208.4 181 61.3
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 5.2e-52 208.4 216 55.1
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 1.5e-51 206.8 198 55.1
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 7.6e-51 204.5 191 58.6
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.3e-50 203.8 194 58.2
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.7e-50 203.4 204 53.9
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 6.4e-50 201.4 195 55.9
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 8.3e-50 201.1 161 61.5
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.1e-49 200.7 198 56.1
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.9e-49 199.9 205 51.2
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 2.4e-49 199.5 203 52.7
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 3.2e-49 199.1 134 69.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 4.1e-49 198.7 96 92.7
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 5.4e-49 198.4 161 60.2
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 7.1e-49 198.0 195 55.4
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.6e-48 196.8 160 61.2
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 2.7e-48 196.1 187 56.7
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 6.0e-48 194.9 165 60.0
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 7.8e-48 194.5 165 59.4
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 7.8e-48 194.5 193 55.4
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.0e-47 194.1 192 55.7
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 2.3e-47 193.0 123 70.7
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 3.0e-47 192.6 186 54.3
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 3.0e-47 192.6 111 75.7
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.9e-47 192.2 175 58.9
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 3.9e-47 192.2 198 50.5
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 1.1e-46 190.7 120 70.0
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.5e-46 190.3 169 57.4
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.5e-46 190.3 173 57.8
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.6e-45 185.7 119 70.6
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.6e-45 185.7 100 82.0
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 6.8e-44 181.4 190 51.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.5e-43 180.3 140 62.9
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.5e-43 180.3 103 76.7
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.4e-43 178.7 178 52.8
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.4e-43 178.7 179 52.5
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 9.9e-43 177.6 126 63.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.9e-42 176.0 116 68.1
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.9e-42 176.0 178 52.8
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.4e-41 173.7 111 69.4
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 2.7e-40 169.5 153 55.6
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 6.0e-40 168.3 197 49.7
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 1.7e-39 166.8 160 51.9
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 1.7e-39 166.8 203 45.8
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.5e-38 162.9 78 91.0
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.9e-34 149.4 159 50.3
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.9e-33 146.7 151 51.0
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 2.4e-33 146.4 188 46.3
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 5.4e-33 145.2 107 62.6
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.7e-32 142.9 159 49.7
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 6.0e-32 141.7 210 43.8
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.0e-31 141.0 94 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 8.1e-29 131.3 112 49.1
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.3e-28 128.6 109 56.0
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.2e-27 127.5 92 60.9
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 2.0e-27 126.7 110 56.4
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.6e-27 126.3 121 51.2
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 5.8e-27 125.2 141 51.1
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 8.7e-23 111.3 123 50.4
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 2.4e-20 103.2 72 62.5
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 3.1e-20 102.8 136 45.6
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.2e-19 100.9 74 68.9
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.9e-17 93.6 110 50.0
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 9.6e-14 81.3 130 42.3
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.1e-12 75.9 47 68.1
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 1.9e-09 67.0 96 37.5
SEGI_30369 Sequoiadendron giganteum HOM05D007022 ORTHO05D014789 5.5e-09 65.5 142 38.0


User provided reference genes

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