Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 4612.8 2504 100.0
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2921.0 2295 74.0
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2785.7 2538 65.2
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2465.3 2513 61.6
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2460.6 2549 60.3
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2285.0 2549 58.3
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 2263.8 2547 55.3
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2246.1 2567 57.2
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2225.3 2583 56.4
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2218.7 2552 56.1
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2155.2 2552 55.4
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2129.4 2552 55.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2124.7 2555 54.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2117.8 2536 54.7
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2111.3 2584 54.5
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2110.9 2593 54.0
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2085.8 2547 54.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2080.1 2550 54.3
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2048.9 2544 53.9
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2044.6 2545 54.7
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2037.3 2542 53.5
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2026.5 2554 53.8
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2018.4 2606 52.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2016.1 2543 53.0
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2010.7 2542 53.1
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2004.9 2611 52.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2003.4 2613 52.5
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1990.7 2540 52.6
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1988.4 2611 52.2
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1987.6 2545 53.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1979.1 2572 53.0
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1976.4 2503 54.1
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1971.4 2204 58.6
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1949.5 2541 52.8
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1944.5 2536 52.6
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1938.3 2523 52.4
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1937.9 2542 51.9
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1928.7 2539 51.4
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1915.2 2555 51.5
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1909.8 2555 51.7
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1900.6 2555 51.5
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1887.8 2567 51.8
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1885.5 2541 52.7
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1868.6 2541 50.8
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1867.4 2558 50.5
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1865.1 2536 50.7
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1846.2 2543 51.0
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1841.6 2544 51.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1838.2 2577 51.4
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1835.8 2050 58.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1830.5 2539 50.5
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1825.8 2556 50.8
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1824.3 2632 48.4
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1819.7 2541 49.9
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1809.7 2534 50.4
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1808.5 2560 50.5
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1805.8 2544 48.7
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1804.6 2636 49.0
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1802.3 2537 49.3
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1792.7 2533 49.8
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1788.5 2561 50.7
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1778.8 2545 50.3
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1777.3 2547 50.6
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1773.4 2545 50.5
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1771.5 2674 47.2
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1727.2 2549 48.3
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1725.7 2561 49.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1715.7 2417 49.8
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1706.0 2566 48.6
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1699.5 2531 48.4
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1689.5 2612 46.4
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1687.9 2590 48.0
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1667.9 2532 48.1
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1659.0 2545 46.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1654.0 2530 48.7
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1625.9 2516 47.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1604.7 2477 45.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1602.8 2531 46.9
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1592.0 2604 46.9
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1583.9 2535 46.0
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1577.0 2553 46.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1553.5 2414 46.3
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1540.8 2547 46.8
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1531.5 2564 47.1
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1518.8 2535 46.7
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1508.4 1908 53.4
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1498.8 2549 45.9
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1425.2 1287 65.2
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1415.6 2519 44.0
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1358.6 2530 43.6
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1310.0 2575 42.9
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1300.4 2538 42.9
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1234.6 2530 41.7
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1213.0 2541 41.5
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1190.3 2423 41.8
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1189.9 2548 41.3
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1183.3 2372 42.4
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1155.6 2485 41.2
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1124.8 2566 39.4
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 5.8e-310 1068.9 2717 38.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 9.9e-310 1068.1 2554 40.1
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 2.3e-306 1057.0 1772 44.4
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 2.1e-299 1033.9 2469 37.7
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.3e-296 1024.6 1728 46.3
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.7e-296 1023.1 2441 38.9
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 9.0e-287 991.9 976 61.2
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 3.6e-275 953.4 964 59.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 3.8e-253 880.2 1107 55.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 7.5e-233 812.8 725 64.1
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.9e-231 808.1 2359 36.7
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.1e-226 792.3 2578 33.7
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.1e-220 772.3 1047 53.6
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 7.3e-220 769.6 1975 38.8
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 8.1e-211 739.6 2338 36.1
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.1e-210 737.6 2339 36.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 5.8e-209 733.4 1825 35.8
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 7.8e-206 723.0 2492 35.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 7.8e-206 723.0 2492 35.0
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 4.3e-204 717.2 955 52.6
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.3e-200 705.7 2533 34.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 9.3e-175 619.8 581 64.2
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 5.7e-148 530.8 784 47.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.8e-141 509.2 461 60.1
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 2.7e-134 485.3 515 56.7
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 3.5e-129 468.4 955 39.1
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.8e-122 446.0 1849 32.3
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 7.8e-121 440.7 697 45.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.3e-119 435.3 1236 33.9
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.1e-118 432.6 2928 29.3
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 8.3e-107 394.0 1380 35.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.9e-96 358.6 2826 28.5
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 9.3e-82 310.8 1043 35.0
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 7.9e-81 307.8 307 54.1
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.8e-77 296.6 974 33.1
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.1e-73 283.1 2795 27.2
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.8e-67 262.3 2772 26.9
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 4.6e-57 228.8 263 54.4
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 2.3e-56 226.5 2342 26.6
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 3.3e-55 222.6 263 53.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.8e-54 219.5 517 36.2
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 9.0e-53 214.5 583 33.6
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 8.8e-48 198.0 236 51.7
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.0e-44 186.8 511 36.8
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 2.7e-41 176.4 326 38.3
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 4.4e-39 169.1 462 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 7.4e-39 168.3 1230 26.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 9.4e-34 151.4 224 45.5
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 8.8e-32 144.8 184 48.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.3e-31 142.9 276 37.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 7.0e-29 135.2 227 45.8
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-15 91.3 57 77.2
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 1.2e-15 91.3 57 77.2
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-15 91.3 80 67.5
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.7e-14 86.3 75 64.0
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.1e-13 84.7 167 40.7
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.0e-11 78.2 235 34.0
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.9e-10 73.9 137 38.7
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 7.2e-10 72.0 85 48.2
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 2.8e-09 70.1 127 37.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 4.7e-09 69.3 101 48.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.2e-07 64.7 690 25.7


User provided reference genes

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