Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.9e-45 184.5 98 100.0
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.4e-26 122.1 91 68.1
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.5e-23 112.8 89 68.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 6.1e-22 107.5 92 67.4
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.0e-21 106.7 96 61.5
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.0e-20 102.4 90 62.2
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 4.4e-20 101.3 92 64.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 5.7e-20 100.9 94 61.7
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 7.4e-20 100.5 90 62.2
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 7.4e-20 100.5 91 63.7
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 7.4e-20 100.5 92 65.2
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-19 99.4 92 62.0
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.2e-19 99.0 93 60.2
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.1e-18 96.7 90 60.0
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 9.1e-18 93.6 92 56.5
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 1.2e-17 93.2 93 58.1
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 94 58.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.2e-17 93.2 94 61.7
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.6e-17 92.8 90 57.8
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 4.5e-17 91.3 90 60.0
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.0e-16 90.1 91 60.4
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.0e-16 90.1 91 60.4
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.0e-16 90.1 91 60.4
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.0e-16 90.1 92 58.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.0e-16 90.1 91 59.3
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.7e-16 89.4 92 56.5
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 1.7e-16 89.4 93 59.1
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 1.7e-16 89.4 89 58.4
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 2.9e-16 88.6 91 57.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 3.8e-16 88.2 94 58.5
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 3.8e-16 88.2 94 57.4
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.8e-16 88.2 94 60.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 5.0e-16 87.8 93 52.7
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.0e-16 87.8 96 56.2
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.5e-16 87.4 94 56.4
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 1.1e-15 86.7 94 58.5
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.5e-15 86.3 92 54.3
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.9e-15 85.9 73 63.0
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.9e-15 85.9 88 60.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.5e-15 85.5 96 52.1
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 2.5e-15 85.5 92 56.5
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.2e-15 85.1 92 54.3
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 3.2e-15 85.1 91 56.0
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 3.2e-15 85.1 96 56.2
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 4.2e-15 84.7 92 52.2
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 4.2e-15 84.7 93 54.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.2e-15 84.7 97 53.6
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 4.2e-15 84.7 81 60.5
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 5.5e-15 84.3 93 51.6
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 5.5e-15 84.3 90 55.6
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 7.2e-15 84.0 93 55.9
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 1.2e-14 83.2 90 54.4
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.6e-14 82.8 92 56.5
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 2.1e-14 82.4 97 50.5
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.1e-14 82.4 94 55.3
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 2.7e-14 82.0 79 60.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 2.7e-14 82.0 94 54.3
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 2.7e-14 82.0 98 55.1
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.7e-14 81.3 92 56.5
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 6.1e-14 80.9 93 55.9
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 6.1e-14 80.9 92 56.5
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 6.1e-14 80.9 93 53.8
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 6.1e-14 80.9 93 53.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 6.1e-14 80.9 95 54.7
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 8.0e-14 80.5 95 52.6
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.4e-13 79.7 91 53.8
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.4e-13 79.7 94 51.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.8e-13 79.3 93 49.5
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.3e-13 79.0 90 54.4
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 4.0e-13 78.2 93 53.8
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.2e-13 77.8 90 56.7
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 5.2e-13 77.8 94 53.2
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 8.8e-13 77.0 92 51.1
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 8.8e-13 77.0 92 51.1
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 8.8e-13 77.0 92 51.1
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.2e-12 76.6 90 54.4
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.2e-12 76.6 91 52.7
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.5e-12 76.3 95 46.3
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.0e-12 75.9 90 56.7
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 3.4e-12 75.1 92 55.4
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 3.4e-12 75.1 92 55.4
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.4e-12 75.1 45 82.2
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 7.5e-12 73.9 91 51.6
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.3e-11 73.2 42 85.7
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 3.7e-11 71.6 91 50.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 3.7e-11 71.6 45 77.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 3.7e-11 71.6 88 52.3
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.8e-11 71.2 94 53.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 1.4e-10 69.7 93 48.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.4e-10 68.9 86 51.2
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.1e-10 68.6 88 50.0
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 4.1e-10 68.2 89 53.9
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 9.1e-10 67.0 86 50.0
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 9.1e-10 67.0 86 50.0
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.2e-09 66.6 93 43.0
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 7.7e-09 63.9 94 45.7
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.3e-08 63.2 87 47.1
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 1.3e-08 63.2 94 46.8
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.3e-08 63.2 84 50.0
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.7e-08 62.8 91 47.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.7e-08 62.8 89 40.4
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 3.8e-08 61.6 94 45.7
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 3.8e-08 61.6 94 48.9
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 5.0e-08 61.2 40 77.5
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 5.0e-08 61.2 43 72.1
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 6.5e-08 60.8 92 43.5
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 8.5e-08 60.5 91 42.9
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 8.5e-08 60.5 92 44.6
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.5e-07 59.7 75 52.0
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.5e-07 59.7 87 44.8
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 2.5e-07 58.9 92 44.6
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 3.2e-07 58.5 70 51.4
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 7.2e-07 57.4 80 45.0
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 9.4e-07 57.0 29 89.7
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.2e-06 56.6 45 57.8
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 1.2e-06 56.6 97 46.4
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.6e-06 56.2 92 41.3
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 4.7e-06 54.7 75 46.7
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 6.1e-06 54.3 92 41.3
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 6.1e-06 54.3 92 48.9


User provided reference genes

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