Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04748 Nelumbo nucifera HOM05D002322 ORTHO05D002536 2.0e-35 151.8 70 100.0
Nn1g08803 Nelumbo nucifera HOM05D002322 ORTHO05D002536 4.8e-13 77.4 53 69.8
MBI16_g07660_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 4.5e-11 70.9 53 62.3
Manes.02G164100 Manihot esculenta HOM05D002322 ORTHO05D002536 4.5e-11 70.9 57 59.6
Medtr1g029850 Medicago truncatula HOM05D002322 ORTHO05D002536 5.9e-11 70.5 50 64.0
Psat6g041640 Pisum sativum HOM05D002322 ORTHO05D002536 5.9e-11 70.5 50 64.0
Glyma.14G151300 Glycine max HOM05D002322 ORTHO05D002536 7.7e-11 70.1 51 60.8
Glyma.13G078000 Glycine max HOM05D002322 ORTHO05D002536 1.0e-10 69.7 51 60.8
Ca_12630_v3 Cicer arietinum L. HOM05D002322 ORTHO05D002536 2.2e-10 68.6 50 62.0
Lj1g0002849 Lotus japonicus HOM05D002322 ORTHO05D002536 2.2e-10 68.6 51 58.8
Lalb_Chr11g0066071 Lupinus albus HOM05D002322 ORTHO05D002536 2.2e-10 68.6 51 58.8
Phvul.008G160100 Phaseolus vulgaris HOM05D002322 ORTHO05D002536 2.2e-10 68.6 51 58.8
VMungo0647G1244 Vigna mungo HOM05D002322 ORTHO05D002536 2.2e-10 68.6 51 58.8
Ah.05g171060 Amaranthus hybridus HOM05D002322 ORTHO05D002536 2.9e-10 68.2 42 69.0
PSO170G2223 Papaver somniferum HOM05D002322 ORTHO05D002536 2.9e-10 68.2 52 63.5
PSO528G0053 Papaver somniferum HOM05D002322 ORTHO05D002536 2.9e-10 68.2 52 63.5
Prupe.1G495000 Prunus persica HOM05D002322 ORTHO05D002536 2.9e-10 68.2 51 62.7
Sp1g19340 Schrenkiella parvula HOM05D002322 ORTHO05D002536 3.8e-10 67.8 43 69.8
TAR376G0741 Trochodendron aralioides HOM05D002322 ORTHO05D002536 3.8e-10 67.8 51 62.7
arahy.Tifrunner.gnm1.ann1.AJZ0JZ Arachis hypogaea HOM05D002322 ORTHO05D002536 5.0e-10 67.4 50 58.0
arahy.Tifrunner.gnm1.ann1.B8TMVD Arachis hypogaea HOM05D002322 ORTHO05D002536 5.0e-10 67.4 50 58.0
arahy.Tifrunner.gnm1.ann1.KGK0UB Arachis hypogaea HOM05D002322 ORTHO05D002536 5.0e-10 67.4 50 58.0
CiPaw.06G031500 Carya illinoinensis HOM05D002322 ORTHO05D002536 5.0e-10 67.4 51 60.8
Rhsim06G0103000 Rhododendron simsii HOM05D002322 ORTHO05D002536 5.0e-10 67.4 53 56.6
TWI32G0225 Tripterygium wilfordii HOM05D002322 ORTHO05D002536 5.0e-10 67.4 50 62.0
Lalb_Chr08g0241291 Lupinus albus HOM05D002322 ORTHO05D002536 6.5e-10 67.0 51 54.9
Prupe.1G495100 Prunus persica HOM05D002322 ORTHO05D002536 6.5e-10 67.0 51 60.8
Aqoxy6G00231 Aquilegia oxysepala HOM05D002322 ORTHO05D002536 8.5e-10 66.6 50 62.0
EL10Ac1g01021 Beta vulgaris HOM05D002322 ORTHO05D002536 8.5e-10 66.6 56 53.6
Nn5g28312 Nelumbo nucifera HOM05D002322 ORTHO05D002536 8.5e-10 66.6 51 64.7
ATR0584G195 Amborella trichopoda HOM05D002322 ORTHO05D002536 1.5e-09 65.9 51 60.8
CSS0037653 Camellia sinensis var. sinensis HOM05D002322 ORTHO05D002536 1.5e-09 65.9 51 58.8
MD08G1162000 Malus domestica HOM05D002322 ORTHO05D002536 1.5e-09 65.9 51 58.8
Duzib093G0090 Durio zibethinus HOM05D002322 ORTHO05D002536 1.9e-09 65.5 50 58.0
Duzib116G0306 Durio zibethinus HOM05D002322 ORTHO05D002536 1.9e-09 65.5 50 58.0
QL09p034417 Quercus lobata HOM05D002322 ORTHO05D002536 1.9e-09 65.5 50 62.0
QL09p034439 Quercus lobata HOM05D002322 ORTHO05D002536 1.9e-09 65.5 50 62.0
AUR62014330 Chenopodium quinoa HOM05D002322 ORTHO05D002536 2.5e-09 65.1 50 58.0
AUR62019073 Chenopodium quinoa HOM05D002322 ORTHO05D002536 2.5e-09 65.1 50 58.0
COL.COLO4_38219 Corchorus olitorius HOM05D002322 ORTHO05D002536 2.5e-09 65.1 37 70.3
Hund17296 Selenicereus undatus HOM05D002322 ORTHO05D002536 2.5e-09 65.1 51 56.9
HPP92_011963 Vanilla planifolia HOM05D002322 ORTHO05D002536 2.5e-09 65.1 51 60.8
Ciclev10001829m.g Citrus clementina HOM05D002322 ORTHO05D002536 3.2e-09 64.7 51 56.9
GSVIVG01008860001 Vitis vinifera HOM05D002322 ORTHO05D002536 3.2e-09 64.7 50 58.0
AL1G34980 Arabidopsis lyrata HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
AT1G21780 Arabidopsis thaliana HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
BcaB07g32177 Brassica carinata HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
BcaC05g26100 Brassica carinata HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
A06p17890 Brassica napus HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
C05p20790 Brassica napus HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
BolC5t30778H Brassica oleracea HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
BraA06t24879Z Brassica rapa HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
Carub.0001s2124 Capsella rubella HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
CARHR022160 Cardamine hirsuta HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
CiPaw.05G220900 Carya illinoinensis HOM05D002322 ORTHO05D002536 4.2e-09 64.3 51 56.9
Haze_00432 Corylus avellana HOM05D002322 ORTHO05D002536 4.2e-09 64.3 51 56.9
Thhalv10008190m.g Eutrema salsugineum HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 75.0
THA.LOC104813656 Tarenaya hassleriana HOM05D002322 ORTHO05D002536 4.2e-09 64.3 50 58.0
Zm00001eb198850 Zea mays HOM05D002322 ORTHO05D002536 4.2e-09 64.3 36 77.8
Atru.chr13.1489 Acer truncatum HOM05D002322 ORTHO05D002536 5.5e-09 63.9 50 56.0
Aa31LG7G5760 Aethionema arabicum HOM05D002322 ORTHO05D002536 5.5e-09 63.9 36 75.0
CSS0036874 Camellia sinensis var. sinensis HOM05D002322 ORTHO05D002536 5.5e-09 63.9 53 54.7
Dinv07213 Davidia involucrata HOM05D002322 ORTHO05D002536 5.5e-09 63.9 51 56.9
HanXRQChr11g0325981 Helianthus annuus HOM05D002322 ORTHO05D002536 5.5e-09 63.9 50 56.0
Lsat_1_v5_gn_4_135241 Lactuca sativa HOM05D002322 ORTHO05D002536 5.5e-09 63.9 50 56.0
Manes.18G078225 Manihot esculenta HOM05D002322 ORTHO05D002536 7.2e-09 63.5 50 60.0
Actinidia02622 Actinidia chinensis HOM05D002322 ORTHO05D002536 9.4e-09 63.2 52 51.9
Gorai.005G089300 Gossypium raimondii HOM05D002322 ORTHO05D002536 9.4e-09 63.2 50 56.0
Hma1.2p1_0129F.1_g060260 Hydrangea macrophylla HOM05D002322 ORTHO05D002536 9.4e-09 63.2 51 54.9
Thecc.08G126500 Theobroma cacao HOM05D002322 ORTHO05D002536 9.4e-09 63.2 36 72.2
Ah.14g078800 Amaranthus hybridus HOM05D002322 ORTHO05D002536 1.2e-08 62.8 36 72.2
Manes.18G077624 Manihot esculenta HOM05D002322 ORTHO05D002536 1.6e-08 62.4 51 58.8
Potri.005G178400 Populus trichocarpa HOM05D002322 ORTHO05D002536 1.6e-08 62.4 37 73.0
RcHm_v2.0_Chr6g0295921 Rosa chinensis HOM05D002322 ORTHO05D002536 1.6e-08 62.4 51 56.9
Cc00_g31570 Coffea canephora HOM05D002322 ORTHO05D002536 2.1e-08 62.0 50 56.0
MSTRG.22409 Avicennia marina HOM05D002322 ORTHO05D002536 2.7e-08 61.6 62 53.2
Glyma.04G247400 Glycine max HOM05D002322 ORTHO05D002536 2.7e-08 61.6 48 56.2
Cpa.g.sc418.4 Carica papaya HOM05D002322 ORTHO05D002536 3.6e-08 61.2 36 75.0
Medtr3g088560 Medicago truncatula HOM05D002322 ORTHO05D002536 8.0e-08 60.1 34 70.6
TPR.G13477 Trifolium pratense HOM05D002322 ORTHO05D002536 8.0e-08 60.1 34 70.6
HPP92_011944 Vanilla planifolia HOM05D002322 ORTHO05D002536 8.0e-08 60.1 36 77.8
FvH4_2g27041 Fragaria vesca HOM05D002322 ORTHO05D002536 1.8e-07 58.9 48 54.2
Lj7C342G5 Lonicera japonica HOM05D002322 ORTHO05D002536 1.8e-07 58.9 50 54.0
Potri.002G082800 Populus trichocarpa HOM05D002322 ORTHO05D002536 1.8e-07 58.9 51 54.9
Sabra02G0064900 Salix brachista HOM05D002322 ORTHO05D002536 1.8e-07 58.9 37 70.3
Dinv27307 Davidia involucrata HOM05D002322 ORTHO05D002536 2.3e-07 58.5 51 51.0
Glyma.06G115300 Glycine max HOM05D002322 ORTHO05D002536 2.3e-07 58.5 48 54.2
Actinidia21327 Actinidia chinensis HOM05D002322 ORTHO05D002536 3.0e-07 58.2 53 47.2
CAN.G2.27 Capsicum annuum HOM05D002322 ORTHO05D002536 3.0e-07 58.2 51 52.9
Migut.N03283 Erythranthe guttata HOM05D002322 ORTHO05D002536 3.0e-07 58.2 52 57.7
FAN15G2425 Fragaria x ananassa HOM05D002322 ORTHO05D002536 3.0e-07 58.2 48 54.2
FAN24G2884 Fragaria x ananassa HOM05D002322 ORTHO05D002536 3.0e-07 58.2 48 54.2
Nitab4.5_0001996g0030 Nicotiana tabacum HOM05D002322 ORTHO05D002536 4.0e-07 57.8 51 52.9
PGR044G2261 Punica granatum HOM05D002322 ORTHO05D002536 4.0e-07 57.8 51 51.0
ECA232G4152 Erigeron canadensis HOM05D004057 ORTHO05D004805 6.7e-07 57.0 50 52.0
Phvul.009G127400 Phaseolus vulgaris HOM05D002322 ORTHO05D002536 6.7e-07 57.0 50 50.0
Sed0010348 Sechium edule HOM05D002322 ORTHO05D002536 6.7e-07 57.0 37 59.5
SEGI_30836 Sequoiadendron giganteum HOM05D002322 ORTHO05D002536 6.7e-07 57.0 51 51.0
Peaxi162Scf00161g00169 Petunia axillaris HOM05D002322 ORTHO05D002536 8.8e-07 56.6 50 54.0
MELO3C010619.2 Cucumis melo HOM05D002322 ORTHO05D002536 1.2e-06 56.2 36 61.1
CsaV3_6G034410 Cucumis sativus L. HOM05D002322 ORTHO05D002536 1.2e-06 56.2 36 61.1
FAN27G1018 Fragaria x ananassa HOM05D002322 ORTHO05D002536 1.2e-06 56.2 48 52.1
Sc26g0003110 Simmondsia chinensis HOM05D002322 ORTHO05D002536 1.2e-06 56.2 54 46.3
SGA_v2.0_scaffold52G18963 Striga asiatica HOM05D002322 ORTHO05D002536 1.2e-06 56.2 52 55.8
Ca_16575_v3 Cicer arietinum L. HOM05D002322 ORTHO05D002536 1.5e-06 55.8 33 66.7
Eucgr.F04351 Eucalyptus grandis HOM05D002322 ORTHO05D002536 2.6e-06 55.1 37 64.9
Solyc11g012840.2 Solanum lycopersicum HOM05D002322 ORTHO05D002536 2.6e-06 55.1 51 51.0
Sopen11g007580 Solanum pennellii HOM05D002322 ORTHO05D002536 2.6e-06 55.1 51 51.0
ClCG08G005730 Citrullus lanatus HOM05D002322 ORTHO05D002536 3.3e-06 54.7 36 58.3
VMungo1309G0853 Vigna mungo HOM05D002322 ORTHO05D002536 3.3e-06 54.7 48 52.1
MSTRG.25381 Avicennia marina HOM05D002322 ORTHO05D002536 4.4e-06 54.3 48 58.3
DCAR_010288 Daucus carota HOM05D002322 ORTHO05D002536 4.4e-06 54.3 51 47.1
Psat5g086160 Pisum sativum HOM05D002322 ORTHO05D002536 5.7e-06 53.9 34 64.7
TWI39G0044 Tripterygium wilfordii HOM05D002322 ORTHO05D002536 7.5e-06 53.5 34 64.7


User provided reference genes

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