Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 7.9e-75 283.9 163 100.0
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.7e-48 195.3 165 72.7
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.7e-48 195.3 165 72.7
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.6e-43 179.9 157 65.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 4.7e-43 178.3 157 65.0
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 8.8e-42 174.1 158 62.0
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 5.7e-41 171.4 165 61.2
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 2.2e-40 169.5 161 61.5
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 3.7e-40 168.7 132 66.7
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.1e-39 167.2 135 64.4
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 4.1e-39 165.2 156 64.1
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 4.1e-39 165.2 157 63.1
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 5.3e-39 164.9 156 60.9
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 5.3e-39 164.9 163 65.0
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.7e-38 162.5 157 58.6
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 4.5e-38 161.8 133 64.7
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 4.5e-38 161.8 156 64.1
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 7.7e-38 161.0 164 59.8
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 7.7e-38 161.0 134 72.4
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.0e-37 160.6 166 55.4
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.7e-37 159.8 151 59.6
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.7e-37 159.8 157 58.0
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 3.8e-37 158.7 157 57.3
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 5.0e-37 158.3 158 62.7
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 6.5e-37 157.9 157 57.3
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 6.5e-37 157.9 157 57.3
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.1e-36 157.1 129 65.9
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.9e-36 156.4 156 55.8
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 2.5e-36 156.0 127 63.8
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.2e-36 155.6 129 65.1
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 5.5e-36 154.8 135 63.7
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 7.2e-36 154.5 160 63.1
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.2e-35 153.7 126 65.1
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.1e-35 152.9 166 54.8
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 3.6e-35 152.1 158 55.1
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 3.6e-35 152.1 156 62.2
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 8.0e-35 151.0 126 63.5
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 8.0e-35 151.0 152 63.8
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.4e-34 150.2 158 56.3
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.4e-34 150.2 96 82.3
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 2.3e-34 149.4 125 66.4
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.3e-34 149.4 129 64.3
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 4.0e-34 148.7 124 64.5
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.2e-34 148.3 125 65.6
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 6.8e-34 147.9 133 61.7
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 6.8e-34 147.9 125 65.6
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 8.8e-34 147.5 194 47.9
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-33 147.1 140 59.3
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.2e-33 147.1 139 59.7
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.2e-33 147.1 150 57.3
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.5e-33 146.7 163 52.1
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.0e-33 146.4 135 60.0
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 3.4e-33 145.6 168 51.2
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.1e-31 140.6 167 52.1
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.1e-31 140.6 158 62.0
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.8e-31 139.8 133 57.9
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.8e-31 139.8 132 58.3
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.1e-31 139.0 129 57.4
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.1e-31 138.7 164 57.3
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 7.0e-31 137.9 165 55.8
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 9.1e-31 137.5 160 48.8
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 2.7e-30 136.0 159 59.1
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 5.9e-30 134.8 132 56.1
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 5.9e-30 134.8 132 56.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 7.7e-30 134.4 156 51.3
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 7.7e-30 134.4 132 56.1
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 7.7e-30 134.4 157 52.9
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 7.7e-30 134.4 132 54.5
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 1.0e-29 134.0 132 56.1
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.3e-29 133.7 132 55.3
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.3e-29 133.7 131 59.5
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 2.3e-29 132.9 132 55.3
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.3e-29 132.9 158 47.5
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.8e-29 132.1 122 58.2
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 5.0e-29 131.7 133 57.9
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 6.6e-29 131.3 124 56.5
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 6.6e-29 131.3 132 54.5
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 4.2e-28 128.6 158 59.5
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 5.5e-28 128.3 124 55.6
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 7.2e-28 127.9 116 59.5
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 3.6e-27 125.6 165 47.9
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 4.7e-27 125.2 128 57.0
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 8.0e-27 124.4 153 53.6
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 3.0e-26 122.5 148 52.7
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 8.9e-26 120.9 123 56.1
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 8.9e-26 120.9 123 56.1
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 1.2e-25 120.6 151 49.7
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.2e-25 120.6 134 60.4
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 1.5e-25 120.2 154 46.8
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.6e-25 119.4 151 51.7
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 5.7e-25 118.2 135 60.0
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.2e-24 116.3 150 47.3
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 2.8e-24 115.9 130 52.3
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.4e-23 112.8 92 68.5
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 2.4e-23 112.8 153 47.1
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 5.4e-23 111.7 151 52.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 7.0e-23 111.3 176 44.3
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 9.2e-23 110.9 159 45.9
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.9e-21 105.9 103 53.4
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 4.3e-20 102.1 132 43.9
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.6e-19 100.1 91 60.4
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 8.0e-19 97.8 175 42.9
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 3.1e-18 95.9 107 50.5
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 5.2e-18 95.1 159 39.6
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 5.2e-18 95.1 159 39.6
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 8.9e-18 94.4 112 53.6
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 1.2e-17 94.0 114 49.1
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 1.5e-17 93.6 107 51.4
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 3.7e-16 89.0 74 62.2
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 6.4e-16 88.2 78 57.7
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.1e-15 87.4 88 58.0
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 9.2e-15 84.3 77 61.0
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 9.2e-15 84.3 110 45.5
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.6e-14 83.6 75 62.7
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 2.0e-14 83.2 115 44.3
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 1.3e-13 80.5 118 43.2
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 6.6e-13 78.2 99 50.5
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 3.3e-12 75.9 83 57.8
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 4.3e-12 75.5 85 55.3
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 7.3e-12 74.7 75 60.0
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 4.7e-11 72.0 83 55.4
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 1.4e-10 70.5 115 45.2
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 3.1e-10 69.3 83 56.6
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 6.8e-10 68.2 110 39.1
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 8.9e-10 67.8 128 38.3
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 8.9e-10 67.8 110 40.0
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.5e-09 67.0 56 60.7
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.5e-09 67.0 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 3.4e-09 65.9 92 47.8
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 7.8e-06 54.7 80 41.2


User provided reference genes

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