Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 8.4e-230 800.0 417 100.0
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-166 589.7 421 77.4
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-166 589.7 421 77.4
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-166 589.7 409 75.6
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 6.8e-163 577.8 386 75.1
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.3e-158 562.8 418 68.4
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 5.6e-157 558.1 362 76.5
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 6.1e-156 554.7 358 75.7
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 3.0e-155 552.4 362 74.0
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 6.8e-155 551.2 405 69.6
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 6.8e-155 551.2 409 68.7
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.2e-154 550.4 372 72.8
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.5e-154 550.1 420 69.3
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 3.7e-153 545.4 366 73.8
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 4.9e-153 545.0 405 68.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 8.3e-153 544.3 363 74.7
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 8.3e-153 544.3 363 74.1
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.4e-152 543.5 400 68.8
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.4e-152 543.5 363 74.4
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 3.2e-152 542.3 361 73.4
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 3.2e-152 542.3 392 70.7
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 4.1e-152 542.0 363 72.7
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.4e-152 541.6 409 68.0
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.2e-151 540.4 420 67.9
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.2e-151 540.4 409 67.7
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 1.2e-151 540.4 405 67.9
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 1.2e-151 540.4 363 72.7
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.6e-151 540.0 417 66.7
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 3.5e-151 538.9 364 73.9
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 3.5e-151 538.9 362 73.2
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.0e-150 537.3 371 73.6
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.3e-150 537.0 404 68.6
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 3.9e-150 535.4 431 64.5
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 5.0e-150 535.0 410 64.9
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 6.6e-150 534.6 362 72.4
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.1e-149 533.9 399 69.4
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 1.5e-149 533.5 367 71.9
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.5e-149 533.5 410 64.4
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 1.9e-149 533.1 404 67.6
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 4.3e-149 531.9 367 71.4
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 5.6e-149 531.6 427 64.2
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 7.3e-149 531.2 372 72.8
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.3e-149 531.2 366 71.0
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.2e-148 530.4 367 71.4
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 3.6e-148 528.9 365 71.2
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 4.7e-148 528.5 363 72.5
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 4.7e-148 528.5 405 66.7
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.4e-147 526.9 411 65.7
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 5.2e-147 525.0 371 71.2
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 8.9e-147 524.2 368 72.0
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 2.0e-146 523.1 367 71.4
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 7.5e-146 521.2 361 70.6
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 7.5e-146 521.2 365 71.2
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.2e-145 519.6 360 70.0
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.9e-145 518.5 366 69.9
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.4e-144 516.9 365 69.6
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.9e-144 516.5 365 70.7
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 1.6e-143 513.5 400 66.0
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 2.0e-143 513.1 349 73.6
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.3e-142 510.4 359 70.5
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 2.3e-142 509.6 371 68.5
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 5.0e-142 508.4 357 71.4
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.5e-141 506.1 364 69.5
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 5.6e-141 505.0 371 68.2
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 7.3e-141 504.6 358 69.8
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 9.5e-141 504.2 434 61.1
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 9.5e-141 504.2 357 68.9
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 9.5e-141 504.2 357 68.6
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 1.2e-140 503.8 358 69.0
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.6e-140 503.4 349 70.8
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.6e-140 503.4 362 67.4
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 3.6e-140 502.3 357 68.9
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 6.2e-140 501.5 368 69.3
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 8.1e-140 501.1 361 69.3
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.4e-139 500.4 357 68.3
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 3.1e-139 499.2 358 69.0
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 4.0e-139 498.8 380 68.2
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 4.0e-139 498.8 380 68.2
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 6.8e-139 498.0 357 68.6
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 6.8e-139 498.0 357 68.6
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 6.8e-139 498.0 358 72.6
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 6.8e-139 498.0 361 68.7
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.2e-138 497.3 363 66.9
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 2.6e-138 496.1 367 68.4
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 5.8e-138 495.0 357 69.2
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.9e-137 492.7 367 65.9
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.4e-136 489.6 360 69.4
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 3.2e-136 489.2 357 68.3
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 1.2e-135 487.3 363 68.0
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.7e-135 486.1 370 66.8
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 3.5e-135 485.7 357 68.3
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 4.6e-135 485.3 382 64.4
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 1.9e-133 479.9 365 67.7
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.5e-130 470.3 358 65.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 2.0e-130 469.9 366 65.3
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 4.6e-127 458.8 365 66.6
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.7e-126 456.8 367 62.4
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.1e-125 454.1 359 66.3
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 8.1e-124 448.0 413 58.4
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 5.1e-118 428.7 370 60.8
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.9e-117 426.8 369 60.7
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.8e-110 403.7 363 57.6
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 4.3e-109 399.1 362 57.7
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.6e-108 397.1 372 54.8
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.1e-107 392.9 362 56.9
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 4.0e-107 392.5 358 57.5
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 3.5e-103 379.4 369 53.1
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 7.9e-103 378.3 319 64.6
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.3e-102 376.7 365 54.0
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.6e-100 370.5 362 54.7
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.9e-93 347.1 267 63.7
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.1e-91 341.3 277 66.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.5e-90 335.9 364 51.1
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.9e-86 322.8 224 67.9
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-80 303.5 177 80.2
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.5e-80 303.5 177 80.2
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 9.4e-80 301.6 307 54.1
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 1.5e-74 284.3 383 44.1
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 8.2e-60 235.3 170 67.1
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 3.8e-57 226.5 377 41.9
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 5.9e-50 202.6 431 36.4
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 6.1e-47 192.6 118 76.3
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 5.8e-37 159.5 387 34.1
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.2e-36 157.5 130 60.0
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.6e-31 141.4 142 54.9
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 4.4e-29 133.3 84 71.4
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.7e-28 131.3 92 71.7
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 6.0e-26 122.9 373 30.6
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 5.4e-11 73.2 88 52.3
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-09 68.9 71 47.9
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.0e-09 68.9 71 47.9
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 1.2e-07 62.0 66 48.5


User provided reference genes

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