Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.8e-171 604.0 320 100.0
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 8.7e-94 347.8 333 62.5
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.0e-54 218.0 332 48.2
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 1.4e-46 191.0 331 44.1
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 5.7e-45 185.7 335 44.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 4.7e-39 166.0 359 40.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.0e-39 165.2 343 39.4
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-38 164.5 342 39.5
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.1e-38 163.3 344 39.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 8.3e-36 155.2 360 37.5
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.4e-35 154.5 352 37.2
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 3.2e-35 153.3 356 37.9
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 4.1e-35 152.9 368 35.3
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.6e-34 151.0 349 37.5
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.0e-33 148.3 365 39.2
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.0e-33 148.3 299 38.5
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 1.3e-33 147.9 303 37.6
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 6.6e-33 145.6 357 35.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.1e-32 144.8 309 39.5
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.5e-32 143.7 311 38.9
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.3e-32 143.3 317 37.5
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 3.3e-32 143.3 299 36.5
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 4.3e-32 142.9 359 35.9
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 5.6e-32 142.5 358 37.2
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 6.2e-31 139.0 347 36.9
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-30 138.3 309 37.2
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-30 138.3 346 35.8
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 2.3e-30 137.1 298 36.2
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.2e-29 134.8 332 35.8
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.5e-29 134.4 355 35.5
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.4e-29 132.9 351 37.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 5.8e-29 132.5 293 36.2
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 7.5e-29 132.1 343 36.4
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 7.5e-29 132.1 323 35.6
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.9e-29 131.7 347 36.6
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.3e-28 131.3 309 38.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.7e-28 131.0 329 35.3
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.7e-28 131.0 326 37.1
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.9e-28 129.4 307 35.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 4.9e-28 129.4 318 37.1
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.3e-28 128.6 307 35.5
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 8.3e-28 128.6 351 35.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-27 127.9 318 34.9
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.9e-27 127.5 338 34.3
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 3.2e-27 126.7 326 35.6
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 5.4e-27 125.9 347 33.1
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 5.4e-27 125.9 349 36.1
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 9.2e-27 125.2 357 33.6
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.1e-26 124.0 318 36.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 7.8e-26 122.1 316 34.2
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.8e-26 122.1 266 38.7
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 7.8e-26 122.1 322 34.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.3e-25 121.3 279 37.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.3e-25 121.3 279 37.3
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.3e-24 116.7 326 34.0
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.3e-24 116.3 297 34.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 4.3e-24 116.3 360 31.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 4.3e-24 116.3 274 39.4
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.2e-23 114.8 328 32.9
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.6e-23 114.4 336 38.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.1e-23 114.0 298 33.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 2.1e-23 114.0 316 32.6
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 6.2e-23 112.5 358 30.4
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.1e-23 112.1 365 32.1
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.1e-22 111.7 365 32.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.1e-22 111.7 366 32.5
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-22 111.7 254 38.6
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.4e-22 111.3 366 32.0
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 1.4e-22 111.3 314 34.1
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.4e-22 111.3 343 34.1
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.8e-22 110.9 327 35.5
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 3.1e-22 110.2 351 33.9
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 3.1e-22 110.2 311 33.4
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 3.1e-22 110.2 365 32.9
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 8.9e-22 108.6 319 34.5
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.2e-21 108.2 296 33.1
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.5e-21 107.8 365 33.4
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.0e-21 107.5 252 36.9
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.0e-21 107.5 315 34.6
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.4e-21 106.7 329 32.5
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 4.4e-21 106.3 299 34.1
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 4.4e-21 106.3 359 30.6
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-20 104.8 254 37.0
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 2.9e-20 103.6 328 32.9
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 2.9e-20 103.6 248 35.1
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.4e-19 101.3 303 32.0
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.4e-19 100.5 328 32.6
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.2e-19 100.1 325 32.0
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 9.2e-19 98.6 367 31.3
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.2e-18 98.2 300 31.3
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 6.0e-18 95.9 325 32.6
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 6.0e-18 95.9 317 32.5
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 7.8e-18 95.5 255 34.5
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 1.7e-17 94.4 294 35.7
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.9e-17 93.2 228 37.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.3e-16 90.1 273 32.2
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.3e-16 89.7 289 32.9
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 1.6e-15 87.8 304 30.3
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.6e-15 87.8 304 30.3
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.6e-15 87.8 304 30.3
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 4.7e-15 86.3 300 30.0
CDE02G0512 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 1.4e-14 84.7 352 30.4
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.8e-14 84.3 215 36.7
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 2.4e-14 84.0 312 30.8
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 4.0e-14 83.2 339 29.2
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 9.0e-14 82.0 258 32.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.5e-13 81.3 327 29.7
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 2.0e-13 80.9 304 31.6
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 2.6e-13 80.5 321 29.3
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 4.4e-13 79.7 297 29.3
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 4.4e-13 79.7 317 31.2
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 4.4e-13 79.7 303 30.4
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 5.8e-13 79.3 322 29.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 7.6e-13 79.0 215 35.3
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 9.9e-13 78.6 301 29.6
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.9e-12 77.0 186 35.5
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 8.4e-12 75.5 318 31.4
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.4e-11 74.7 304 28.9
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 1.9e-11 74.3 185 36.8
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.4e-11 73.9 187 36.4
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 3.2e-11 73.6 197 33.5
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 9.3e-11 72.0 152 38.8
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.6e-10 71.2 197 33.0
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 2.1e-10 70.9 190 34.2
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 7.8e-10 68.9 187 37.4
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 3.0e-09 67.0 256 31.2
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 8.7e-09 65.5 189 33.3
Nn5g30944 Nelumbo nucifera HOM05D005407 ORTHO05D006544 9.6e-08 62.0 49 63.3
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.3e-07 61.6 323 30.0
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 3.6e-07 60.1 187 32.6
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 3.6e-07 60.1 187 32.6
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 6.2e-07 59.3 160 29.4
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 8.1e-07 58.9 304 27.6
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 8.1e-07 58.9 199 35.2
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.1e-06 57.0 301 27.9
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 3.1e-06 57.0 228 29.8
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 4.0e-06 56.6 290 26.6
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.9e-06 55.8 294 26.9
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 6.9e-06 55.8 195 34.4


User provided reference genes

Program Settings