Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.2e-103 379.0 203 100.0
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.1e-62 243.8 137 79.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.2e-61 240.4 134 76.9
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 4.4e-59 231.9 131 75.6
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 9.9e-59 230.7 131 76.3
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 9.9e-59 230.7 132 74.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.8e-58 228.8 130 76.2
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 3.2e-57 225.7 133 73.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 7.1e-57 224.6 134 73.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 7.1e-57 224.6 125 77.6
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 7.1e-57 224.6 134 71.6
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.2e-56 223.8 119 80.7
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.2e-56 223.8 120 79.2
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 1.6e-56 223.4 119 80.7
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.7e-56 222.6 134 70.9
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.8e-56 221.1 120 79.2
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 7.8e-56 221.1 134 70.1
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 7.8e-56 221.1 134 72.4
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.3e-55 219.5 137 71.5
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.3e-55 219.5 119 78.2
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.3e-55 219.5 128 74.2
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.3e-55 219.5 134 72.4
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.0e-55 219.2 126 73.8
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 3.0e-55 219.2 134 69.4
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 5.1e-55 218.4 120 76.7
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 5.1e-55 218.4 132 70.5
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 6.6e-55 218.0 134 74.6
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 6.6e-55 218.0 133 71.4
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.6e-55 218.0 134 67.9
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 6.6e-55 218.0 120 77.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.1e-54 217.2 137 70.8
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.5e-54 216.9 133 69.2
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.9e-54 216.5 132 70.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.5e-54 216.1 134 70.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 5.6e-54 214.9 133 70.7
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 5.6e-54 214.9 135 71.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 9.6e-54 214.2 132 69.7
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.6e-53 213.4 134 69.4
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.6e-53 213.4 118 77.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.6e-53 213.4 133 71.4
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.6e-53 213.4 134 70.1
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.8e-53 212.6 123 78.9
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 3.6e-53 212.2 118 78.0
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.6e-53 212.2 134 71.6
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.8e-53 211.8 118 78.0
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 6.2e-53 211.5 117 75.2
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.2e-53 211.5 132 68.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 8.1e-53 211.1 123 77.2
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 8.1e-53 211.1 133 70.7
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.1e-52 210.7 116 78.4
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-52 210.3 120 75.8
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.8e-52 209.9 134 66.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.8e-52 209.9 134 67.2
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.8e-52 209.9 132 68.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.4e-52 209.5 116 77.6
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 5.3e-52 208.4 138 63.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.2e-51 207.2 132 68.9
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.5e-51 206.8 120 73.3
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 2.0e-51 206.5 118 74.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.6e-51 206.1 128 71.1
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.6e-51 206.1 120 72.5
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.6e-51 206.1 134 69.4
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 5.8e-51 204.9 120 72.5
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 9.9e-51 204.1 118 72.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.2e-50 203.0 118 72.0
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 4.9e-50 201.8 117 75.2
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 6.4e-50 201.4 124 72.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.4e-49 200.3 115 73.0
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.4e-49 200.3 116 71.6
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.9e-49 199.9 116 73.3
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.9e-49 199.9 119 71.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 3.2e-49 199.1 115 73.0
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.2e-49 199.1 124 71.8
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 7.1e-49 198.0 117 73.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.3e-49 197.6 117 75.2
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.2e-48 197.2 115 70.4
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.2e-48 197.2 136 63.2
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.6e-48 196.8 120 70.8
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.1e-48 196.4 115 70.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 3.5e-48 195.7 115 72.2
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.5e-48 195.7 115 71.3
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 4.6e-48 195.3 115 71.3
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 4.6e-48 195.3 115 71.3
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.6e-48 195.3 119 70.6
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 6.0e-48 194.9 115 69.6
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 7.9e-48 194.5 115 70.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 7.9e-48 194.5 116 69.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 7.9e-48 194.5 137 62.8
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.3e-47 193.7 114 71.9
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.3e-47 193.7 118 71.2
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.3e-47 193.7 118 71.2
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.7e-47 193.4 115 70.4
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 5.1e-47 191.8 115 71.3
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 5.1e-47 191.8 109 75.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 8.7e-47 191.0 116 68.1
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.1e-46 190.7 121 73.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.4e-44 183.0 117 69.2
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.5e-43 180.3 148 55.4
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 7.6e-43 177.9 119 65.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.5e-41 171.8 133 60.9
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 6.9e-36 154.8 99 68.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 8.4e-34 147.9 117 60.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 8.4e-34 147.9 94 67.0
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.9e-33 146.7 117 55.6
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.9e-31 139.0 117 53.8
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.5e-30 137.1 75 77.3
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 1.1e-28 131.0 97 56.7
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 5.9e-27 125.2 134 47.8
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 2.2e-26 123.2 74 68.9
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 5.0e-26 122.1 114 44.7
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 6.5e-26 121.7 114 51.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 8.4e-26 121.3 92 57.6
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 6.7e-23 111.7 89 50.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.1e-22 110.9 118 49.2
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 3.3e-22 109.4 93 47.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 4.3e-22 109.0 73 65.8
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 9.7e-22 107.8 116 47.4
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.9e-18 96.3 99 43.4
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 6.5e-18 95.1 93 45.2
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 3.2e-17 92.8 92 45.7
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 3.7e-13 79.3 67 50.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 3.4e-11 72.8 56 55.4
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 5.0e-10 68.9 75 44.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.5e-09 66.6 36 77.8
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 6.1e-08 62.0 40 67.5
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 7.9e-08 61.6 40 65.0
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.1e-07 58.9 110 38.2
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.1e-06 57.8 61 44.3


User provided reference genes

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