Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 7.3e-59 230.3 115 100.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.9e-23 112.1 119 54.6
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 7.9e-21 104.0 148 43.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.0e-20 102.1 118 50.0
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 3.7e-18 95.1 116 47.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 6.9e-17 90.9 110 48.2
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.5e-16 89.7 109 47.7
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.6e-16 89.0 109 48.6
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.6e-16 89.0 109 48.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 5.9e-16 87.8 119 44.5
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.7e-16 87.4 111 45.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 2.2e-15 85.9 122 45.1
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.9e-15 85.5 122 41.8
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.0e-15 84.7 119 42.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 6.5e-15 84.3 120 40.8
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.5e-15 84.3 117 48.7
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.4e-14 83.2 120 41.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 5.5e-14 81.3 115 44.3
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 7.2e-14 80.9 119 42.9
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 7.2e-14 80.9 118 40.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 9.4e-14 80.5 116 44.8
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.6e-13 79.7 116 40.5
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.6e-13 79.7 120 42.5
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.6e-13 78.6 112 42.9
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.6e-13 78.2 82 52.4
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 6.1e-13 77.8 114 42.1
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.4e-12 76.6 132 40.2
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.0e-12 75.5 116 41.4
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.0e-12 75.5 116 39.7
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 3.0e-12 75.5 113 41.6
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.1e-12 74.7 120 40.8
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 5.1e-12 74.7 84 48.8
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 6.7e-12 74.3 110 45.5
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.8e-12 73.9 110 45.5
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 8.8e-12 73.9 118 41.5
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-11 73.6 113 38.9
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.5e-11 73.2 113 39.8
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.0e-11 72.8 117 41.0
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 2.5e-11 72.4 113 40.7
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 4.3e-11 71.6 112 39.3
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.7e-11 71.2 110 44.5
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 7.4e-11 70.9 110 40.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 7.4e-11 70.9 113 44.2
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.7e-11 70.5 120 41.7
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.3e-10 70.1 112 40.2
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.3e-10 70.1 117 41.9
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.7e-10 68.6 120 40.8
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 4.8e-10 68.2 110 38.2
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 8.2e-10 67.4 82 45.1
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 8.2e-10 67.4 112 41.1
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 8.2e-10 67.4 115 42.6
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.1e-09 67.0 120 40.8
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-09 67.0 120 40.0
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-09 67.0 120 40.8
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-09 67.0 109 35.8
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.1e-09 67.0 109 35.8
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.4e-09 66.6 74 51.4
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.4e-09 66.6 108 42.6
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.4e-09 66.6 108 40.7
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.4e-09 66.6 85 49.4
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.8e-09 66.2 105 40.0
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 4.1e-09 65.1 73 45.2
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 5.3e-09 64.7 113 37.2
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.1e-09 63.9 74 43.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 9.1e-09 63.9 116 40.5
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.2e-08 63.5 70 50.0
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.5e-08 63.2 93 38.7
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 2.0e-08 62.8 125 37.6
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 2.0e-08 62.8 116 33.6
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.6e-08 62.4 118 38.1
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.6e-08 62.4 122 36.9
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 2.6e-08 62.4 116 37.1
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 3.4e-08 62.0 70 48.6
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 4.5e-08 61.6 97 39.2
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.5e-08 61.6 61 50.8
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 5.9e-08 61.2 70 45.7
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 7.7e-08 60.8 78 41.0
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 7.7e-08 60.8 95 37.9
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.0e-07 60.5 65 46.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.0e-07 60.5 82 40.2
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.3e-07 60.1 138 34.8
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.7e-07 59.7 111 30.6
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.7e-07 59.7 73 41.1
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.7e-07 59.7 114 36.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.2e-07 59.3 69 44.9
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.2e-07 59.3 111 37.8
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 2.2e-07 59.3 115 38.3
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 2.2e-07 59.3 115 38.3
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 3.8e-07 58.5 98 38.8
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 5.0e-07 58.2 108 39.8
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.0e-07 58.2 69 47.8
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 5.0e-07 58.2 115 37.4
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 5.0e-07 58.2 117 35.0
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 5.0e-07 58.2 116 39.7
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 6.5e-07 57.8 58 51.7
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 6.5e-07 57.8 59 52.5
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.5e-07 57.8 105 35.2
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 8.5e-07 57.4 80 41.2
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.1e-06 57.0 110 39.1
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.1e-06 57.0 115 37.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.4e-06 56.6 114 37.7
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.4e-06 56.6 129 36.4
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.4e-06 56.6 115 35.7
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.9e-06 56.2 103 37.9
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.9e-06 56.2 106 29.2
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.2e-06 55.5 104 32.7
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 3.2e-06 55.5 114 36.0
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 4.2e-06 55.1 112 33.9
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 4.2e-06 55.1 101 33.7
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 5.5e-06 54.7 62 41.9
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 7.2e-06 54.3 81 43.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 9.4e-06 53.9 120 33.3
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 9.4e-06 53.9 109 36.7
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 9.4e-06 53.9 56 51.8


User provided reference genes

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