Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.5e-222 774.6 389 100.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.5e-151 539.3 400 71.2
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 2.1e-97 360.1 370 55.1
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.8e-91 339.3 383 52.7
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.2e-90 336.3 381 54.1
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.2e-90 336.3 381 54.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 2.1e-89 333.6 368 52.4
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 5.7e-87 325.5 388 52.6
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 6.2e-86 322.0 382 52.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.0e-83 314.7 380 50.0
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.1e-81 307.0 395 48.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.1e-80 302.4 370 48.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.1e-79 301.2 373 48.8
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.3e-79 299.7 374 48.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.7e-79 298.9 386 47.9
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.3e-78 297.7 382 47.9
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.8e-78 296.6 371 49.6
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 6.3e-78 295.4 383 50.4
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.8e-77 293.9 390 47.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.1e-77 293.1 365 51.0
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.1e-77 293.1 363 48.5
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.3e-77 292.4 392 46.9
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 9.0e-77 291.6 369 49.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 9.0e-77 291.6 393 46.8
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.5e-76 290.8 375 49.1
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 7.7e-76 288.5 374 48.7
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.7e-75 287.3 392 46.7
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 2.9e-75 286.6 383 47.3
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.1e-74 284.6 380 46.6
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.2e-73 281.2 377 46.7
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.6e-73 280.8 380 48.4
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.6e-73 280.8 380 48.4
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.8e-72 277.3 373 48.3
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 2.3e-72 276.9 399 46.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.5e-71 273.5 387 44.4
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 3.7e-70 269.6 403 44.4
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 8.2e-70 268.5 373 44.8
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.4e-69 267.7 369 45.8
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.8e-69 267.3 400 45.0
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-68 264.6 377 45.1
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.0e-68 263.8 388 44.6
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 5.9e-68 262.3 381 42.8
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.0e-67 261.5 383 43.6
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.3e-67 261.2 385 46.2
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.7e-67 260.8 388 46.9
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 3.8e-67 259.6 375 42.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 8.5e-67 258.5 375 43.2
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 3.2e-66 256.5 349 49.0
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 9.4e-66 255.0 394 43.1
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.6e-65 254.2 401 45.6
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.6e-65 253.1 393 43.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 6.1e-65 252.3 404 44.8
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 6.1e-65 252.3 378 46.8
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.0e-64 250.0 357 48.7
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.9e-64 249.6 387 43.2
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 5.1e-64 249.2 387 42.9
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.1e-64 249.2 387 42.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 8.8e-64 248.4 381 46.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 2.6e-63 246.9 384 45.3
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 3.5e-60 236.5 439 37.1
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.2e-59 233.8 373 43.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 4.7e-57 226.1 392 40.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 5.2e-56 222.6 372 40.1
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 5.2e-56 222.6 376 39.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 5.2e-56 222.6 374 42.0
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.8e-56 221.9 378 41.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 5.7e-55 219.2 398 39.7
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 5.7e-55 219.2 388 40.5
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.3e-54 218.0 387 39.8
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.7e-54 217.6 372 42.5
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.8e-54 216.9 384 43.2
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 4.8e-54 216.1 379 39.8
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 8.2e-54 215.3 369 40.4
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.1e-53 214.9 383 38.9
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.0e-52 210.7 390 41.0
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.0e-51 208.4 396 38.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-51 207.6 377 39.8
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.2e-51 207.2 376 39.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 6.5e-51 205.7 376 39.6
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 6.5e-51 205.7 398 38.2
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-50 204.1 376 39.6
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.9e-50 204.1 377 39.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.9e-50 204.1 195 57.9
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.9e-50 204.1 383 39.7
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 5.5e-50 202.6 384 39.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.5e-50 202.6 351 40.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 5.5e-50 202.6 392 38.0
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 7.2e-50 202.2 271 47.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 9.4e-50 201.8 380 39.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.6e-49 201.1 365 39.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 4.7e-49 199.5 382 39.0
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 6.1e-49 199.1 375 40.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 8.0e-49 198.7 382 39.3
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.0e-48 198.4 367 40.3
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.3e-48 197.2 392 39.3
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 3.0e-48 196.8 372 39.5
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 6.8e-48 195.7 386 38.6
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 8.8e-48 195.3 359 39.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 4.4e-47 193.0 263 49.8
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 7.5e-47 192.2 436 35.8
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.7e-46 189.9 262 48.9
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 3.1e-45 186.8 401 37.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 4.5e-44 183.0 379 36.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.5e-42 177.9 408 33.6
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 5.5e-42 176.0 427 35.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.6e-41 174.5 357 38.7
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.6e-41 173.3 285 41.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.0e-40 171.8 211 45.0
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.8e-40 171.0 368 35.9
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 6.8e-40 169.1 300 38.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.0e-39 167.5 197 47.2
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 5.7e-39 166.0 355 35.5
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.7e-38 164.5 380 32.1
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 3.7e-38 163.3 204 49.5
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.7e-38 163.3 176 52.3
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 8.3e-38 162.2 385 33.8
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 4.1e-37 159.8 346 35.5
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.2e-36 158.3 362 35.1
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.7e-35 154.5 383 34.2
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 8.6e-35 152.1 218 40.8
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 9.5e-34 148.7 135 54.8
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.7e-31 139.4 125 60.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 2.4e-29 134.0 175 42.9
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 7.8e-28 129.0 184 42.4
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.0e-27 128.6 302 36.4
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 6.4e-22 109.4 192 40.6
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.1e-21 108.6 166 36.7
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.4e-21 106.3 167 40.1
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.2e-21 105.5 156 37.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 2.7e-20 104.0 164 37.8
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 7.3e-18 95.9 156 34.0
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.6e-17 94.7 155 34.8
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.1e-17 94.4 155 33.5
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.0e-11 75.5 164 31.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-11 74.3 164 31.7
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-11 74.3 164 31.7
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-11 74.3 164 31.7
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.3e-11 74.3 164 31.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 5.1e-11 73.2 164 31.1
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 1.9e-10 71.2 164 30.5
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 9.5e-10 68.9 100 40.0
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 1.2e-09 68.6 164 30.5
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.6e-09 68.2 360 27.2
CSS0016125 Camellia sinensis var. sinensis HOM05D001735 ORTHO05D001640 1.6e-09 68.2 151 31.1
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.6e-09 68.2 174 29.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 2.1e-09 67.8 116 42.2
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 8.1e-09 65.9 152 29.6
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 8.1e-09 65.9 161 29.2
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 8.1e-09 65.9 151 29.1
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.4e-08 65.1 71 52.1
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 1.8e-08 64.7 152 28.3
CDE09G1341 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 4.0e-08 63.5 152 28.3
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 5.2e-08 63.2 151 29.8
Cpa.g.sc4.106 Carica papaya HOM05D001735 ORTHO05D001640 6.8e-08 62.8 153 27.5
Dinv11099 Davidia involucrata HOM05D001735 ORTHO05D001640 6.8e-08 62.8 152 30.3
Nitab4.5_0010847g0010 Nicotiana tabacum HOM05D001735 ORTHO05D001640 1.5e-07 61.6 154 31.2
Oeu019940.1 Olea europaea HOM05D001735 ORTHO05D001640 4.4e-07 60.1 116 32.8
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 7.6e-07 59.3 244 30.7
CAN.G352.44 Capsicum annuum HOM05D001735 ORTHO05D001640 9.9e-07 58.9 154 30.5
Oeu057927.1 Olea europaea HOM05D001735 ORTHO05D001640 1.3e-06 58.5 104 35.6
Duzib084G1429 Durio zibethinus HOM05D001735 ORTHO05D001640 1.7e-06 58.2 151 27.8
Lj5C98T5 Lonicera japonica HOM05D001735 ORTHO05D001640 1.7e-06 58.2 152 30.3
Solyc03g111100.1 Solanum lycopersicum HOM05D001735 ORTHO05D001640 1.7e-06 58.2 154 32.5
TAR371G0269 Trochodendron aralioides HOM05D001735 ORTHO05D001640 1.7e-06 58.2 149 30.9
Peaxi162Scf00089g00038 Petunia axillaris HOM05D001735 ORTHO05D001640 2.2e-06 57.8 356 26.7
Atru.chr9.1025 Acer truncatum HOM05D001735 ORTHO05D001640 2.9e-06 57.4 160 28.1
Nitab4.5_0001664g0080 Nicotiana tabacum HOM05D001735 ORTHO05D001640 3.7e-06 57.0 154 29.9
Sopen03g030250 Solanum pennellii HOM05D001735 ORTHO05D001640 4.9e-06 56.6 154 31.8
PGSC0003DMG400015196 Solanum tuberosum HOM05D001735 ORTHO05D001640 4.9e-06 56.6 158 31.6
DCAR_007476 Daucus carota HOM05D001735 ORTHO05D001640 6.4e-06 56.2 112 33.0
CAN.G352.36 Capsicum annuum HOM05D001735 ORTHO05D001640 8.4e-06 55.8 154 29.9
Lsat_1_v5_gn_2_93821 Lactuca sativa HOM05D001735 ORTHO05D001640 8.4e-06 55.8 116 30.2


User provided reference genes

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