Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 4.3e-53 211.1 107 100.0
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 1.2e-52 209.5 107 99.1
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 5.4e-48 194.1 107 86.9
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 7.1e-48 193.7 107 87.9
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 3.5e-47 191.4 106 86.8
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 3.5e-47 191.4 107 88.8
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 6.0e-47 190.7 107 90.7
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 7.8e-47 190.3 107 87.9
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 1.0e-46 189.9 107 86.9
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 3.0e-46 188.3 107 86.0
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.0e-46 188.3 107 86.0
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 3.9e-46 188.0 107 87.9
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 3.9e-46 188.0 107 87.9
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 5.1e-46 187.6 107 86.0
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 3.3e-45 184.9 107 86.9
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 4.3e-45 184.5 107 86.9
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 9.5e-45 183.3 107 84.1
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.2e-44 183.0 107 84.1
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.2e-44 183.0 107 84.1
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 1.6e-44 182.6 107 83.2
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 1.1e-43 179.9 107 82.2
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.4e-43 179.5 102 85.3
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 1.8e-43 179.1 107 85.0
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.4e-43 178.7 107 84.1
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 2.4e-43 178.7 107 81.3
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 4.0e-43 177.9 107 83.2
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 4.0e-43 177.9 107 83.2
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 6.8e-43 177.2 107 79.4
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 6.8e-43 177.2 105 83.8
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 8.9e-43 176.8 107 78.5
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 8.9e-43 176.8 107 81.3
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 8.9e-43 176.8 107 82.2
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 1.2e-42 176.4 106 82.1
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 1.2e-42 176.4 107 82.2
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 1.2e-42 176.4 107 81.3
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 1.2e-42 176.4 107 81.3
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 1.2e-42 176.4 107 81.3
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 1.5e-42 176.0 107 81.3
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.5e-42 176.0 107 79.4
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 2.6e-42 175.3 105 83.8
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 3.4e-42 174.9 107 84.1
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 5.8e-42 174.1 105 80.0
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 5.8e-42 174.1 107 81.3
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 5.8e-42 174.1 107 81.3
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 9.9e-42 173.3 107 80.4
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 9.9e-42 173.3 107 80.4
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 9.9e-42 173.3 107 80.4
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 2.2e-41 172.2 107 79.4
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.9e-41 171.8 105 81.0
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.9e-41 171.8 105 81.0
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 2.9e-41 171.8 107 81.3
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 3.8e-41 171.4 107 80.4
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 3.8e-41 171.4 107 80.4
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 3.8e-41 171.4 104 82.7
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 4.9e-41 171.0 105 81.0
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 4.9e-41 171.0 107 79.4
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.9e-41 171.0 105 80.0
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 8.4e-41 170.2 107 77.6
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 8.4e-41 170.2 104 80.8
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 1.9e-40 169.1 107 78.5
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.9e-40 169.1 105 79.0
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 2.4e-40 168.7 107 80.4
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 2.4e-40 168.7 106 77.4
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 3.2e-40 168.3 105 83.8
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 4.1e-40 167.9 105 79.0
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 4.1e-40 167.9 104 80.8
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 7.1e-40 167.2 107 75.7
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 1.2e-39 166.4 105 79.0
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.2e-39 166.4 107 75.7
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.2e-39 166.4 107 76.6
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.6e-39 166.0 105 81.0
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 2.1e-39 165.6 105 80.0
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 2.7e-39 165.2 103 81.6
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 1.0e-38 163.3 107 78.5
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 1.0e-38 163.3 107 78.5
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 1.0e-38 163.3 107 78.5
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 1.0e-38 163.3 107 78.5
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.0e-38 163.3 107 81.3
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 2.3e-38 162.2 93 86.0
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 2.3e-38 162.2 98 81.6
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 3.0e-38 161.8 105 76.2
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 3.0e-38 161.8 93 86.0
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 6.6e-38 160.6 101 81.2
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 6.6e-38 160.6 93 86.0
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 2.5e-37 158.7 101 80.2
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 3.3e-37 158.3 101 80.2
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 3.3e-37 158.3 107 73.8
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 3.3e-37 158.3 100 77.0
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 5.6e-37 157.5 93 83.9
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 9.6e-37 156.8 108 75.9
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 3.6e-36 154.8 105 73.3
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.1e-35 153.3 99 75.8
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.1e-35 153.3 104 76.9
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.8e-35 152.5 101 75.2
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.8e-35 152.5 101 75.2
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.4e-35 152.1 104 76.0
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 1.2e-34 149.8 107 70.1
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.5e-34 149.4 105 71.4
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 2.6e-34 148.7 105 72.4
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 4.9e-33 144.4 107 69.2
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.2e-32 141.4 110 66.4
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 4.6e-31 137.9 107 67.3
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 1.3e-30 136.3 107 70.1
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 3.9e-30 134.8 93 76.3
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 5.1e-30 134.4 107 63.6
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 6.6e-30 134.0 100 73.0
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 3.3e-29 131.7 100 73.0
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 4.8e-28 127.9 106 65.1
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 8.1e-28 127.1 105 66.7
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 9.0e-27 123.6 91 68.1
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 3.4e-26 121.7 98 63.3
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 6.4e-25 117.5 95 67.4
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 1.2e-23 113.2 85 65.9
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 2.1e-23 112.5 85 64.7
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 6.0e-23 110.9 67 79.1
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.1e-21 106.7 106 53.8
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 2.5e-21 105.5 90 58.9
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 1.2e-18 96.7 88 56.8
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 2.7e-15 85.5 65 63.1
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 1.0e-14 83.6 71 57.7
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.0e-14 83.6 136 42.6
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 6.9e-11 70.9 49 71.4
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 5.8e-10 67.8 60 58.3
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 7.6e-10 67.4 40 82.5
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 4.9e-09 64.7 44 70.5
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.1e-08 63.5 85 35.3


User provided reference genes

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