Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 8.7e-51 203.4 104 100.0
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 9.0e-32 140.2 69 98.6
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 5.5e-29 131.0 69 91.3
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 5.5e-29 131.0 69 91.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 2.1e-28 129.0 69 89.9
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 2.7e-28 128.6 69 88.4
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 7.9e-28 127.1 69 89.9
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 2.3e-27 125.6 69 88.4
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 2.3e-27 125.6 69 88.4
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 6.7e-27 124.0 69 87.0
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 8.7e-27 123.6 69 88.4
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 8.7e-27 123.6 70 85.7
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 1.5e-26 122.9 69 82.6
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 1.9e-26 122.5 69 82.6
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.3e-26 121.7 69 85.5
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 4.3e-26 121.3 69 81.2
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 5.7e-26 120.9 69 84.1
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 7.4e-26 120.6 70 84.3
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 1.3e-25 119.8 69 82.6
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.3e-25 119.8 70 84.3
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 1.3e-25 119.8 72 81.9
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 1.3e-25 119.8 69 82.6
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 1.6e-25 119.4 69 87.0
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.6e-25 119.4 69 82.6
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 1.6e-25 119.4 69 82.6
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.6e-25 119.4 69 82.6
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 1.6e-25 119.4 69 85.5
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.1e-25 119.0 71 80.3
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 2.8e-25 118.6 69 81.2
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 2.8e-25 118.6 69 87.0
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 3.7e-25 118.2 69 84.1
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.7e-25 118.2 69 84.1
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 3.7e-25 118.2 69 84.1
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 3.7e-25 118.2 69 84.1
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 4.8e-25 117.9 69 82.6
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 4.8e-25 117.9 71 83.1
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 6.2e-25 117.5 72 80.6
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 6.2e-25 117.5 72 80.6
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 8.2e-25 117.1 72 80.6
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 8.2e-25 117.1 72 80.6
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 1.1e-24 116.7 69 79.7
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 1.1e-24 116.7 72 79.2
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 1.4e-24 116.3 72 79.2
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 1.4e-24 116.3 72 79.2
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 1.4e-24 116.3 69 81.2
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 1.4e-24 116.3 72 80.6
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 1.8e-24 115.9 69 82.6
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 1.8e-24 115.9 69 81.2
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.4e-24 115.5 69 79.7
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 3.1e-24 115.2 72 79.2
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 3.1e-24 115.2 72 79.2
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 3.1e-24 115.2 72 79.2
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 3.1e-24 115.2 69 79.7
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 4.1e-24 114.8 72 79.2
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 5.3e-24 114.4 69 78.3
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 6.9e-24 114.0 69 79.7
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 9.0e-24 113.6 69 79.7
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 9.0e-24 113.6 72 77.8
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 9.0e-24 113.6 69 82.6
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 2.0e-23 112.5 69 78.3
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 2.6e-23 112.1 72 77.8
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 2.6e-23 112.1 92 64.1
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 3.4e-23 111.7 69 78.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 4.5e-23 111.3 69 79.7
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 4.5e-23 111.3 69 76.8
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 4.5e-23 111.3 70 78.6
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 7.6e-23 110.5 72 76.4
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 7.6e-23 110.5 69 75.4
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 1.0e-22 110.2 69 78.3
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 1.0e-22 110.2 69 79.7
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 1.0e-22 110.2 69 76.8
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 1.3e-22 109.8 72 75.0
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.3e-22 109.8 69 78.3
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.3e-22 109.8 69 76.8
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 2.2e-22 109.0 69 79.7
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 2.9e-22 108.6 69 73.9
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 2.9e-22 108.6 69 75.4
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 3.8e-22 108.2 72 75.0
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 5.0e-22 107.8 69 76.8
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 6.5e-22 107.5 69 76.8
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 8.4e-22 107.1 69 76.8
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 8.4e-22 107.1 69 76.8
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 1.4e-21 106.3 69 75.4
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 1.9e-21 105.9 69 76.8
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 1.9e-21 105.9 69 79.7
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.9e-21 105.9 69 78.3
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 3.2e-21 105.1 69 75.4
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 4.2e-21 104.8 69 73.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 4.2e-21 104.8 68 77.9
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 4.2e-21 104.8 69 75.4
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 4.2e-21 104.8 69 76.8
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 5.5e-21 104.4 68 75.0
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 5.5e-21 104.4 68 75.0
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 5.5e-21 104.4 69 76.8
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 7.2e-21 104.0 69 78.3
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 1.2e-20 103.2 69 75.4
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 1.6e-20 102.8 68 79.4
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.6e-20 102.8 69 75.4
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 2.7e-20 102.1 69 72.5
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 4.6e-20 101.3 69 71.0
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 3.9e-19 98.2 69 69.6
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 5.1e-19 97.8 69 75.4
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 8.7e-19 97.1 69 66.7
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 1.5e-18 96.3 69 72.5
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 7.4e-18 94.0 69 68.1
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 1.1e-16 90.1 69 66.7
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 3.1e-16 88.6 69 66.7
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 3.1e-16 88.6 63 73.0
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.7e-14 82.8 69 63.8
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 3.2e-13 78.6 75 54.7
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 3.6e-12 75.1 69 59.4
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 7.9e-12 73.9 64 64.1
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 7.9e-12 73.9 58 67.2
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 1.4e-08 63.2 98 43.9
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 1.8e-08 62.8 61 50.8
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 6.9e-08 60.8 44 68.2
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 1.5e-07 59.7 68 47.1
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 2.6e-07 58.9 80 45.0


User provided reference genes

Program Settings