Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.1e-169 600.5 456 100.0
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 4.9e-122 442.2 384 88.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.7e-114 417.2 383 84.9
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.4e-105 387.5 457 74.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 9.5e-102 374.8 456 70.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 9.2e-97 358.2 320 84.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.2e-96 357.8 385 74.0
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.1e-96 357.1 392 78.8
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 4.6e-96 355.9 384 73.7
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 7.8e-96 355.1 382 74.6
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.3e-95 354.4 387 76.5
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.3e-95 353.6 385 77.1
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.9e-95 352.8 386 71.0
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.5e-94 350.9 383 72.3
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 2.5e-94 350.1 383 77.0
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-94 350.1 383 77.0
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.3e-94 348.6 384 76.6
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-93 347.8 384 76.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.8e-93 346.7 385 75.3
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 4.7e-93 345.9 385 76.1
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.1e-93 345.1 384 73.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.8e-92 344.0 460 68.0
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.8e-92 344.0 385 74.0
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.4e-92 343.6 384 76.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 4.4e-91 339.3 463 67.0
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 7.6e-91 338.6 385 75.1
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.7e-90 337.4 454 68.5
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.7e-90 337.4 456 66.2
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.2e-90 337.0 438 70.1
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-89 334.3 384 69.5
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.9e-89 334.0 442 68.6
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.1e-89 332.0 387 74.7
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 9.2e-89 331.6 385 71.7
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.6e-88 330.9 383 73.9
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 7.8e-88 328.6 386 74.6
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 3.0e-87 326.6 385 74.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.1e-87 325.9 382 71.2
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.1e-86 324.7 381 73.0
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 3.3e-86 323.2 386 68.7
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.6e-86 322.4 383 71.0
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.2e-85 321.2 383 72.8
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 2.1e-85 320.5 446 68.2
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 2.1e-85 320.5 383 70.8
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 4.7e-85 319.3 383 71.3
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.8e-84 317.4 350 76.6
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.8e-84 317.4 454 62.6
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.8e-84 317.4 384 73.4
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.8e-84 317.4 381 74.3
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.1e-84 316.6 382 69.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.0e-84 316.2 382 71.7
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.0e-84 316.2 384 66.9
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.0e-84 316.2 382 71.2
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 9.0e-84 315.1 454 62.8
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.2e-83 314.7 385 68.8
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.0e-83 313.9 383 73.4
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.0e-83 313.9 383 72.8
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.6e-83 313.5 382 70.9
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 3.4e-83 313.2 383 73.9
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 4.4e-83 312.8 458 61.8
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 7.6e-83 312.0 379 71.5
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-82 311.2 383 73.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.2e-82 310.5 383 71.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 6.4e-82 308.9 382 67.5
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.1e-81 308.1 385 73.2
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.1e-81 308.1 383 67.4
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.9e-81 307.4 359 76.0
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.4e-81 307.0 459 66.2
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.2e-80 304.7 382 71.7
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.1e-80 303.9 383 67.4
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.5e-80 303.1 368 71.5
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 6.0e-80 302.4 388 66.8
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.0e-79 301.6 382 67.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.0e-79 301.6 382 71.2
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.3e-79 301.2 382 72.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 3.0e-79 300.1 453 66.7
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 3.9e-79 299.7 385 73.2
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 3.9e-79 299.7 382 71.5
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 5.1e-79 299.3 382 69.4
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.1e-78 298.1 383 71.0
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.5e-78 297.7 383 65.5
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.9e-78 297.4 382 69.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.3e-78 296.2 383 71.5
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.6e-78 295.8 381 69.0
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.8e-76 290.8 451 62.1
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.8e-76 290.8 325 73.2
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.3e-76 289.3 367 70.0
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 9.0e-76 288.5 386 64.2
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.5e-75 287.7 393 68.2
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 1.5e-75 287.7 383 65.0
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.5e-75 286.2 452 59.5
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 9.9e-75 285.0 369 66.1
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.3e-74 284.6 389 69.2
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 3.8e-74 283.1 369 65.9
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.8e-74 283.1 355 67.0
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.4e-73 281.2 382 67.8
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.4e-73 281.2 386 68.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.9e-73 280.8 380 65.8
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 5.4e-73 279.3 382 69.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.6e-72 277.7 476 61.6
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 6.0e-72 275.8 386 65.3
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.4e-70 268.9 391 67.5
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 9.6e-70 268.5 414 65.2
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.5e-67 261.2 395 63.5
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 9.9e-67 258.5 393 65.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.3e-66 258.1 186 66.7
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 8.4e-66 255.4 390 67.9
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.4e-65 254.6 395 62.5
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 5.5e-65 252.7 395 62.8
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 5.5e-65 252.7 383 68.1
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 4.6e-64 249.6 464 58.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.0e-63 248.4 391 58.8
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.3e-63 248.1 386 61.4
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.3e-63 248.1 392 64.5
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 3.0e-63 246.9 326 69.3
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 3.9e-63 246.5 348 64.1
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.5e-62 244.6 301 80.4
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.1e-61 240.7 394 59.9
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 4.8e-61 239.6 389 66.8
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-60 236.9 467 57.4
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.1e-60 236.9 467 57.4
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.1e-60 236.9 467 57.4
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.3e-60 236.1 465 61.1
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.0e-59 234.2 393 64.6
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 2.6e-59 233.8 393 64.6
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.0e-58 231.9 370 43.0
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 3.8e-58 229.9 438 58.4
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 3.8e-58 229.9 466 56.2
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 7.9e-56 222.2 386 64.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.3e-54 216.9 388 56.2
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 3.4e-51 206.8 387 64.3
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 5.0e-50 203.0 386 44.0
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.0e-47 195.3 337 56.1
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 2.3e-47 194.1 391 54.2
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.0e-47 193.7 386 62.2
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 3.0e-47 193.7 388 62.1
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 6.7e-47 192.6 388 61.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 6.7e-47 192.6 388 61.9
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 6.3e-45 186.0 380 62.1
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.0e-43 181.0 398 54.0
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.7e-43 179.1 375 60.0
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.0e-42 178.7 283 73.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 5.0e-42 176.4 280 76.1
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.9e-41 174.5 327 63.6
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.4e-41 172.2 415 47.0
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 4.7e-40 169.9 329 59.3
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 7.9e-40 169.1 192 49.5
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.4e-39 168.3 195 49.7
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.0e-39 167.2 399 53.4
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.6e-38 164.1 256 71.1
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 4.4e-38 163.3 170 50.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.7e-37 161.4 402 54.7
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.8e-37 160.6 123 61.8
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 9.1e-36 155.6 401 55.1
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.7e-35 152.5 328 56.4
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 8.5e-34 149.1 394 48.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 9.4e-33 145.6 249 79.1
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.0e-23 115.5 245 61.2
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.4e-23 115.2 101 64.4
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.0e-22 111.3 118 62.7
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.1e-20 104.0 103 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 7.0e-20 102.8 332 50.3
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.3e-18 98.6 91 53.8
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 5.0e-18 96.7 110 50.0
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 3.0e-15 87.4 164 36.0
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 6.8e-15 86.3 158 40.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.2e-13 81.3 54 64.8
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.4e-12 76.6 54 61.1
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 7.0e-12 76.3 87 51.7
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 7.0e-12 76.3 112 56.2
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.6e-08 63.9 51 52.9
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.0e-07 62.4 50 52.0
HanXRQChr04g0116951 Helianthus annuus HOM05D004193 ORTHO05D004862 1.4e-07 62.0 154 79.2


User provided reference genes

Program Settings