Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 6.4e-119 430.6 200 100.0
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.8e-106 388.7 212 86.8
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 6.0e-93 344.4 211 75.8
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 2.2e-87 325.9 211 70.6
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 5.5e-86 321.2 211 69.2
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 1.0e-71 273.9 208 61.5
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 2.9e-71 272.3 208 59.6
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 7.9e-69 264.2 206 58.7
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 1.8e-68 263.1 206 58.7
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 2.3e-68 262.7 203 58.6
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 3.0e-68 262.3 204 56.9
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 2.6e-67 259.2 211 56.9
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 6.3e-66 254.6 209 55.5
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 1.8e-65 253.1 208 55.3
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 4.1e-65 251.9 206 57.3
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 9.1e-65 250.8 203 56.2
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.6e-64 250.0 208 54.8
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.0e-64 249.6 207 55.1
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 2.6e-64 249.2 212 54.2
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 3.5e-64 248.8 208 54.3
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 4.5e-64 248.4 208 54.3
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 5.9e-64 248.1 208 53.8
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.0e-63 247.3 212 54.2
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 2.9e-63 245.7 208 53.4
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 2.9e-63 245.7 208 53.4
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 1.5e-62 243.4 208 53.4
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 1.9e-62 243.0 210 52.9
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 3.2e-62 242.3 201 54.2
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 5.5e-62 241.5 208 52.9
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 5.5e-62 241.5 198 56.6
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 1.6e-61 240.0 202 53.5
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.7e-61 239.2 207 53.6
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 1.0e-60 237.3 207 54.6
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 1.4e-60 236.9 207 52.2
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 1.8e-60 236.5 207 53.1
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 3.0e-60 235.7 210 52.4
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 4.0e-60 235.3 205 49.8
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 5.2e-60 235.0 218 52.3
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 5.2e-60 235.0 202 52.0
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 1.5e-59 233.4 205 53.7
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 9.7e-59 230.7 205 52.2
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 1.7e-58 229.9 206 53.4
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 3.7e-58 228.8 207 50.7
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 4.8e-58 228.4 219 51.1
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 2.0e-56 223.0 206 49.5
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 2.7e-56 222.6 174 60.9
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 1.3e-55 220.3 207 50.7
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 1.3e-55 220.3 207 50.7
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.2e-55 219.5 208 51.0
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.2e-55 219.5 208 51.0
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 2.9e-55 219.2 211 49.8
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 5.0e-55 218.4 207 50.2
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 1.9e-54 216.5 205 49.3
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 2.5e-54 216.1 207 51.7
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 7.2e-54 214.5 203 47.8
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 6.1e-53 211.5 199 48.2
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 1.4e-52 210.3 209 48.8
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 3.0e-52 209.1 209 49.3
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 1.2e-51 207.2 207 46.4
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 3.4e-51 205.7 201 48.8
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 2.2e-50 203.0 205 47.3
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 1.4e-49 200.3 209 45.9
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 4.1e-49 198.7 214 44.4
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 5.4e-49 198.4 208 46.6
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 7.0e-49 198.0 212 43.4
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 1.2e-48 197.2 196 47.4
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 2.0e-48 196.4 209 43.5
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 3.5e-48 195.7 152 57.2
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 1.3e-47 193.7 210 47.1
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 1.7e-47 193.4 207 42.5
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 5.0e-47 191.8 203 45.3
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 5.4e-41 171.8 195 44.6
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 9.2e-41 171.0 204 44.6
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 3.5e-40 169.1 196 44.4
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 8.9e-36 154.5 155 50.3
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 4.6e-32 142.1 202 37.6
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 1.7e-31 140.2 134 50.7
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 2.8e-29 132.9 192 37.0
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 2.9e-26 122.9 111 53.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 7.0e-25 118.2 208 34.1
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 1.1e-22 110.9 203 34.5
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 1.1e-22 110.9 202 31.2
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.5e-22 109.8 211 31.8
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.0e-19 100.1 86 62.8
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 7.5e-19 98.2 48 89.6
TAR381G1462 Trochodendron aralioides HOM05D007423 ORTHO05D009091 2.4e-09 66.6 174 29.9
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 3.2e-09 66.2 195 28.7
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 7.1e-09 65.1 60 53.3
Nn5g30581 Nelumbo nucifera HOM05D007423 ORTHO05D009091 1.6e-08 63.9 171 26.3
Gohir.A05G209900 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.7e-07 60.5 173 26.6
FAN20G0463 Fragaria x ananassa HOM05D007423 ORTHO05D009091 3.9e-07 59.3 137 28.5
FvH4_2g33130 Fragaria vesca HOM05D007423 ORTHO05D009091 8.7e-07 58.2 137 28.5
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 8.7e-07 58.2 137 28.5
FAN24G2841 Fragaria x ananassa HOM05D007423 ORTHO05D009091 8.7e-07 58.2 137 28.5
RcHm_v2.0_Chr6g0309541 Rosa chinensis HOM05D007423 ORTHO05D009091 1.1e-06 57.8 121 29.8
MBI16_g07988_MAGBIO Magnolia biondii HOM05D007423 ORTHO05D009091 1.5e-06 57.4 169 27.2


User provided reference genes

Program Settings