Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-39 165.2 86 100.0
QL11p047249 Quercus lobata HOM05D000002 ORTHO05D000001 2.9e-12 75.1 53 69.8
CSS0012084 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.6e-12 73.9 53 69.8
Hma1.2p1_0774F.1_g216300 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-11 72.8 53 66.0
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.5e-11 72.0 53 66.0
QL09p034601 Quercus lobata HOM05D000002 ORTHO05D000001 2.5e-11 72.0 71 56.3
Hma1.2p1_0774F.1_g216320 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.3e-11 71.6 53 66.0
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-10 69.7 53 62.3
CSS0024481 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.6e-10 69.3 53 62.3
Hma1.2p1_0176F.1_g077340 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.8e-10 68.6 53 60.4
Nn1g09172 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-10 68.2 48 62.5
RcHm_v2.0_Chr2g0154461 Rosa chinensis HOM05D000002 ORTHO05D000001 3.6e-10 68.2 53 60.4
Nn1g02566 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.7e-10 67.8 53 60.4
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 6.1e-10 67.4 69 50.7
Nn1g02755 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.0e-10 67.0 53 54.7
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-10 67.0 53 58.5
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-10 67.0 53 58.5
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-10 67.0 53 58.5
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.0e-09 66.6 53 58.5
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 1.0e-09 66.6 53 60.4
TWI18G1021 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 1.8e-09 65.9 53 60.4
CSS0040283 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.3e-09 65.5 53 56.6
Nn5g26837 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.0e-09 65.1 53 52.8
Nn8g40241 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.0e-09 64.7 53 54.7
CSS0020407 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.2e-09 64.3 53 52.8
TWI60G0947 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 5.2e-09 64.3 53 56.6
CSS0001792 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-08 62.8 53 54.7
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 1.5e-08 62.8 54 57.4
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 1.5e-08 62.8 54 57.4
Hma1.2p1_0414F.1_g147800 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.0e-08 62.4 80 43.8
PSO541G3208 Papaver somniferum HOM05D000002 ORTHO05D000001 2.0e-08 62.4 53 54.7
CSS0047943 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-08 62.0 53 49.1
Hma1.2p1_0774F.1_g216290 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.6e-08 62.0 59 52.5
TWI56G1078 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 2.6e-08 62.0 53 54.7
CSS0006722 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.4e-08 61.6 53 49.1
Sopen07g005890 Solanum pennellii HOM05D000002 ORTHO05D000001 3.4e-08 61.6 48 60.4
CSS0036210 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.4e-08 61.2 53 54.7
Sopen02g011630 Solanum pennellii HOM05D000002 ORTHO05D000001 5.7e-08 60.8 53 54.7
CSS0045643 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.5e-08 60.5 53 47.2
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.5e-08 60.5 53 50.9
Nn1g06977 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.5e-08 60.5 85 40.0
CSS0035415 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 47.2
CSS0039281 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 47.2
FvH4_3g45132 Fragaria vesca HOM05D000002 ORTHO05D000001 9.8e-08 60.1 54 57.4
Hma1.2p1_0010F.1_g006990 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 50.9
Sopen01g017420 Solanum pennellii HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 54.7
Sopen05g010950 Solanum pennellii HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 54.7
Sopen05g018370 Solanum pennellii HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 54.7
Sopen06g017010 Solanum pennellii HOM05D000002 ORTHO05D000001 9.8e-08 60.1 53 54.7
Ciclev10023933m.g Citrus clementina HOM05D000002 ORTHO05D000001 1.3e-07 59.7 48 58.3
Nn2g10460 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.3e-07 59.7 53 50.9
Nn1g04729 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-07 59.3 53 50.9
Nn4g24443 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.7e-07 59.3 53 52.8
CSS0025880 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-07 58.9 53 50.9
Nn1g04728 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.2e-07 58.9 53 49.1
Sopen12g010580 Solanum pennellii HOM05D000014 ORTHO05D000093 2.2e-07 58.9 53 50.9
CSS0008000 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.8e-07 58.5 53 50.9
Rhsim02G0093500 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.7e-07 58.2 53 47.2
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-07 58.2 53 47.2
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.7e-07 58.2 53 47.2
CSS0001757 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 50.9
CSS0008175 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 50.9
CSS0015841 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 50.9
CSS0046072 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 50.9
Rhsim01G0080600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 47.2
Rhsim13G0212300 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 63 47.6
Sopen05g010210 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 52.8
Sopen10g016240 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 52.8
Sopen10g031560 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 52.8
Sopen11g010630 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 52.8
Sopen12g017790 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-07 57.8 53 52.8
Atru.chr4.75 Acer truncatum HOM05D000002 ORTHO05D000001 6.3e-07 57.4 53 49.1
CSS0046044 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-07 57.4 48 56.2
CSS0048686 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.3e-07 57.4 53 50.9
RhsimUnG0229000 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.3e-07 57.4 52 53.8
CSS0045479 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.3e-07 57.0 53 43.4
Nn4g25618 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.3e-07 57.0 53 52.8
CSS0014796 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-06 56.6 53 49.1
CSS0015876 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-06 56.6 53 47.2
Nn2g15368 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.1e-06 56.6 48 52.1
CANSAT01G2627 Cannabis sativa HOM05D000002 ORTHO05D000001 1.4e-06 56.2 48 50.0
CsaV3_6G019120 Cucumis sativus L. HOM05D000002 ORTHO05D000001 1.4e-06 56.2 53 49.1
Hma1.2p1_0617F.1_g190200 Hydrangea macrophylla HOM05D000006 ORTHO05D000001 1.4e-06 56.2 46 54.3
Lalb_Chr23g0274091 Lupinus albus HOM05D000002 ORTHO05D000001 1.4e-06 56.2 53 47.2
Nn1g06669 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.4e-06 56.2 53 49.1
Sopen03g020180 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 53 50.9
Sopen11g010290 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.2 53 47.2
CSS0016912 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.8e-06 55.8 52 50.0
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 55.5 53 49.1
CSS0050078 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-06 55.5 53 49.1
Nn1g02200 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.4e-06 55.5 53 62.3
Nn5g30083 Nelumbo nucifera HOM05D000002 ORTHO05D000001 2.4e-06 55.5 53 45.3
CSS0012618 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 53 43.4
CSS0013769 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 53 49.1
CSS0016567 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 53 50.9
CSS0032896 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 53 52.8
CSS0036759 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.1e-06 55.1 63 47.6
Nn5g28050 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.1e-06 54.7 53 45.3
Sopen01g013480 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-06 54.7 53 45.3
Sopen10g024510 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-06 54.7 53 49.1
Sopen03g025100 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 53 45.3
Sopen05g007860 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.3 53 49.1
CSS0015467 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.0e-06 53.9 53 54.7
Ciclev10013585m.g Citrus clementina HOM05D000002 ORTHO05D000001 7.0e-06 53.9 53 45.3
Nn3g21197 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-06 53.9 69 37.7
Nn6g34150 Nelumbo nucifera HOM05D000002 ORTHO05D000001 7.0e-06 53.9 53 45.3
QL11p039861 Quercus lobata HOM05D000002 ORTHO05D000001 7.0e-06 53.9 53 43.4
CSS0014778 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-06 53.5 53 47.2
CSS0040082 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.2e-06 53.5 53 47.2
Nn1g08060 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.2e-06 53.5 53 45.3
Nn4g24384 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.2e-06 53.5 65 41.5
Nn6g34560 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.2e-06 53.5 65 41.5
Nn6g34561 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.2e-06 53.5 65 41.5
Nn7g37206 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.2e-06 53.5 53 43.4


User provided reference genes

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