Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 3.6e-200 701.4 369 100.0
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.9e-77 292.7 319 57.1
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 5.2e-66 255.8 288 54.2
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.3e-61 241.1 306 45.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 8.6e-61 238.4 361 44.9
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.5e-54 216.5 265 47.9
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 5.1e-53 212.6 381 42.8
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 3.6e-51 206.5 313 42.8
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 1.1e-50 204.9 280 45.0
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.4e-50 203.8 288 42.0
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 6.8e-50 202.2 348 45.7
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 5.8e-49 199.1 363 40.5
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 5.8e-49 199.1 320 39.1
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 7.6e-49 198.7 259 51.4
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 7.6e-49 198.7 279 40.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 2.9e-48 196.8 308 39.6
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 3.8e-48 196.4 323 37.5
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.4e-47 193.7 351 44.2
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 3.2e-47 193.4 173 60.7
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 7.1e-47 192.2 361 42.4
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 9.3e-47 191.8 298 41.9
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.0e-45 188.3 372 37.1
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 3.9e-45 186.4 316 38.0
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 8.7e-45 185.3 297 46.5
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.1e-44 184.9 321 36.8
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 1.1e-44 184.9 321 36.8
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.5e-44 183.7 365 37.5
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 5.6e-44 182.6 368 37.5
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.6e-43 181.0 371 34.8
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 2.1e-43 180.6 265 42.3
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 8.1e-43 178.7 323 41.2
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.1e-43 178.7 234 45.7
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 8.1e-43 178.7 308 39.9
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 1.1e-42 178.3 335 39.4
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 3.1e-42 176.8 305 38.4
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 5.3e-42 176.0 264 43.2
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.5e-41 174.5 275 41.5
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 2.6e-41 173.7 306 36.9
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 3.4e-41 173.3 259 40.5
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 3.4e-41 173.3 368 41.6
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 5.8e-41 172.6 340 37.4
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 5.8e-41 172.6 218 47.2
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.3e-40 171.4 252 42.1
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 2.2e-40 170.6 301 36.5
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.1e-39 168.3 362 35.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.4e-39 167.9 358 35.5
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.4e-39 167.9 255 41.2
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 1.4e-39 167.9 315 37.8
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.4e-39 167.2 162 51.9
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 5.4e-39 166.0 255 40.4
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 9.3e-39 165.2 356 36.5
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 9.3e-39 165.2 295 36.3
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 9.3e-39 165.2 399 35.1
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 9.3e-39 165.2 312 42.3
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 2.7e-38 163.7 182 48.9
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 1.3e-37 161.4 361 34.1
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 1.7e-37 161.0 360 35.3
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 1.7e-37 161.0 184 47.3
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 2.3e-37 160.6 219 43.4
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 2.3e-37 160.6 424 34.0
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 3.9e-37 159.8 270 39.6
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 5.1e-37 159.5 253 38.7
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 5.1e-37 159.5 340 36.5
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.1e-36 158.3 259 40.5
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 1.1e-36 158.3 337 37.4
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 3.6e-35 153.3 185 45.9
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 8.1e-35 152.1 267 40.4
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 1.4e-34 151.4 258 38.4
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.4e-34 151.4 364 35.7
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 1.8e-34 151.0 258 38.4
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 1.8e-34 151.0 188 44.1
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 3.1e-34 150.2 215 39.5
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 9.0e-34 148.7 212 40.6
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 9.0e-34 148.7 198 44.9
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.2e-33 148.3 249 40.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 1.2e-33 148.3 233 42.5
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 1.5e-33 147.9 251 38.6
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.0e-33 147.5 258 39.9
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 3.4e-33 146.7 228 43.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 5.8e-33 146.0 216 39.4
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 7.6e-33 145.6 254 37.0
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 7.6e-33 145.6 265 45.7
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 9.9e-33 145.2 238 39.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.7e-32 144.4 254 37.4
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 2.9e-32 143.7 258 37.6
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 2.9e-32 143.7 275 37.1
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.8e-32 143.3 254 37.8
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.8e-32 143.3 183 44.8
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 6.4e-32 142.5 198 43.4
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 6.4e-32 142.5 229 40.2
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 8.4e-32 142.1 257 37.4
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.4e-31 141.4 190 42.6
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 1.9e-31 141.0 246 38.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 3.2e-31 140.2 233 37.3
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.2e-31 140.2 260 36.2
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.2e-30 138.3 287 36.9
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.2e-30 138.3 240 36.7
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.6e-30 137.9 190 43.7
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 3.5e-30 136.7 296 33.8
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 6.0e-30 136.0 256 35.9
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.0e-30 136.0 198 41.4
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.3e-29 134.8 304 33.2
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 2.3e-29 134.0 411 29.2
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 3.9e-29 133.3 267 36.3
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.1e-28 131.7 379 35.1
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 4.3e-28 129.8 238 42.0
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 6.2e-27 125.9 344 31.7
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 9.0e-26 122.1 132 47.0
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.8e-24 116.7 325 29.8
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.2e-22 111.7 135 45.9
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.0e-21 108.6 386 26.2
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 1.3e-21 108.2 167 40.7
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.3e-21 107.5 87 52.9
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 3.3e-20 103.6 218 33.5
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 8.2e-19 99.0 82 57.3
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 2.6e-17 94.0 174 33.9
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 1.1e-15 88.6 124 38.7
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.4e-15 88.2 100 44.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.2e-15 87.0 80 56.2
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 1.0e-13 82.0 88 51.1
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.8e-13 81.3 220 31.4
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 8.7e-13 79.0 254 29.5
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 8.7e-13 79.0 154 34.4
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 4.3e-12 76.6 66 53.0
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 3.7e-11 73.6 151 35.8
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 4.1e-10 70.1 154 27.9
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 5.3e-10 69.7 62 50.0
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 1.7e-08 64.7 114 36.8
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 2.2e-08 64.3 139 35.3
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 6.5e-08 62.8 177 27.1


User provided reference genes

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