Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04373 Nelumbo nucifera HOM05D000566 ORTHO05D008456 4.9e-73 277.7 140 100.0
TAR626G0526 Trochodendron aralioides HOM05D000566 ORTHO05D008456 4.4e-50 201.4 140 76.4
Dinv04627 Davidia involucrata HOM05D000566 ORTHO05D008456 3.5e-39 165.2 125 72.0
CiPaw.09G068300 Carya illinoinensis HOM05D000566 ORTHO05D008456 3.3e-37 158.7 115 75.7
FvH4_3g07991 Fragaria vesca HOM05D000566 ORTHO05D008456 9.6e-37 157.1 115 71.3
FAN11G2813 Fragaria x ananassa HOM05D000566 ORTHO05D008456 9.6e-37 157.1 115 70.4
FAN25G1525 Fragaria x ananassa HOM05D000566 ORTHO05D000686 1.3e-36 156.8 113 72.6
MELO3C007220.2 Cucumis melo HOM05D000566 ORTHO05D008456 2.1e-36 156.0 144 63.2
RcHm_v2.0_Chr5g0010321 Rosa chinensis HOM05D000566 ORTHO05D008456 3.6e-36 155.2 113 71.7
Hma1.2p1_0437F.1_g152980 Hydrangea macrophylla HOM05D000566 ORTHO05D008456 4.8e-36 154.8 117 70.9
FAN21G0306 Fragaria x ananassa HOM05D000566 ORTHO05D008456 6.2e-36 154.5 115 69.6
EL10Ac8g20507 Beta vulgaris HOM05D000566 ORTHO05D008456 8.1e-36 154.1 103 80.6
ClCG01G023650 Citrullus lanatus HOM05D000566 ORTHO05D008456 8.1e-36 154.1 104 76.0
Thecc.06G173200 Theobroma cacao HOM05D000566 ORTHO05D008456 8.1e-36 154.1 108 75.0
Ciclev10016472m.g Citrus clementina HOM05D000566 ORTHO05D008456 1.4e-35 153.3 149 59.7
Prupe.4G059300 Prunus persica HOM05D000566 ORTHO05D008456 1.8e-35 152.9 116 71.6
QL05p046292 Quercus lobata HOM05D000566 ORTHO05D008456 1.8e-35 152.9 108 75.9
vmacro03936 Vaccinium macrocarpon HOM05D000566 ORTHO05D008456 1.8e-35 152.9 157 58.6
PSO541G3700 Papaver somniferum HOM05D000566 ORTHO05D008456 2.4e-35 152.5 147 59.2
COL.COLO4_31322 Corchorus olitorius HOM05D000566 ORTHO05D000686 3.1e-35 152.1 108 75.0
TWI38G1860 Tripterygium wilfordii HOM05D000566 ORTHO05D008456 3.1e-35 152.1 124 69.4
Duzib192G0190 Durio zibethinus HOM05D000566 ORTHO05D008456 4.0e-35 151.8 121 71.9
CsaV3_6G050800 Cucumis sativus L. HOM05D000566 ORTHO05D008456 5.3e-35 151.4 102 75.5
Sed0006380 Sechium edule HOM05D000566 ORTHO05D008456 5.3e-35 151.4 146 59.6
THA.LOC104814247 Tarenaya hassleriana HOM05D000566 ORTHO05D008456 5.3e-35 151.4 123 67.5
Gohir.A06G134006 Gossypium hirsutum HOM05D000566 ORTHO05D008456 6.9e-35 151.0 108 75.0
MD10G1282600 Malus domestica HOM05D000566 ORTHO05D008456 6.9e-35 151.0 116 66.4
Sc05g0007190 Simmondsia chinensis HOM05D000566 ORTHO05D008456 6.9e-35 151.0 141 61.7
Haze_06259 Corylus avellana HOM05D000566 ORTHO05D008456 9.0e-35 150.6 115 70.4
Eucgr.E02712 Eucalyptus grandis HOM05D000566 ORTHO05D008456 1.2e-34 150.2 102 76.5
Aqoxy1G03201 Aquilegia oxysepala HOM05D000566 ORTHO05D008456 2.0e-34 149.4 82 86.6
Rhsim13G0191700 Rhododendron simsii HOM05D000566 ORTHO05D000686 2.0e-34 149.4 129 65.1
Actinidia16807 Actinidia chinensis HOM05D000566 ORTHO05D008456 2.6e-34 149.1 93 80.6
Gohir.D06G136400 Gossypium hirsutum HOM05D000566 ORTHO05D008456 2.6e-34 149.1 108 74.1
MBI06_g25985_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D008456 2.6e-34 149.1 103 75.7
PGR042G3563 Punica granatum HOM05D000566 ORTHO05D008456 2.6e-34 149.1 107 76.6
Lj4g0018718 Lotus japonicus HOM05D000566 ORTHO05D008456 3.4e-34 148.7 121 67.8
Manes.16G037200 Manihot esculenta HOM05D000566 ORTHO05D008456 3.4e-34 148.7 99 80.8
GSVIVG01021190001 Vitis vinifera HOM05D000566 ORTHO05D008456 3.4e-34 148.7 78 93.6
Cpa.g.sc7.62 Carica papaya HOM05D000566 ORTHO05D008456 4.5e-34 148.3 124 67.7
Glyma.13G171000 Glycine max HOM05D000566 ORTHO05D008456 4.5e-34 148.3 113 69.0
CANSAT35G0195 Cannabis sativa HOM05D000566 ORTHO05D008456 5.8e-34 147.9 128 64.8
Gorai.010G158600 Gossypium raimondii HOM05D000566 ORTHO05D008456 7.6e-34 147.5 108 73.1
Phvul.003G058300 Phaseolus vulgaris HOM05D000566 ORTHO05D008456 7.6e-34 147.5 113 69.9
Cfa000591 Carpinus fangiana HOM05D000566 ORTHO05D008456 9.9e-34 147.1 115 72.2
Ca_26053_v3 Cicer arietinum L. HOM05D000566 ORTHO05D008456 9.9e-34 147.1 94 79.8
Oeu039926.1 Olea europaea HOM05D000566 ORTHO05D008456 9.9e-34 147.1 79 89.9
Potri.011G064600 Populus trichocarpa HOM05D000566 ORTHO05D008456 9.9e-34 147.1 112 71.4
MSTRG.7396 Avicennia marina HOM05D000566 ORTHO05D008456 1.3e-33 146.7 101 75.2
SalBow8G0706 Salvia bowleyana HOM05D000566 ORTHO05D008456 1.3e-33 146.7 126 65.1
Hund23960 Selenicereus undatus HOM05D000566 ORTHO05D008456 1.3e-33 146.7 126 65.9
PSO675G8854 Papaver somniferum HOM05D000566 ORTHO05D008456 1.7e-33 146.4 117 66.7
Peaxi162Scf01479g00012 Petunia axillaris HOM05D000566 ORTHO05D008456 2.9e-33 145.6 101 71.3
Sabra11G0046400 Salix brachista HOM05D000566 ORTHO05D008456 2.9e-33 145.6 126 62.7
Migut.M01050 Erythranthe guttata HOM05D000566 ORTHO05D008456 3.8e-33 145.2 123 66.7
FAN16G3553 Fragaria x ananassa HOM05D000566 ORTHO05D008456 3.8e-33 145.2 109 69.7
Psat7g118880 Pisum sativum HOM05D000566 ORTHO05D008456 3.8e-33 145.2 136 60.3
SGA_v2.0_scaffold1G00030 Striga asiatica HOM05D000566 ORTHO05D008456 3.8e-33 145.2 101 73.3
unitig_699.g19342 Utricularia gibba HOM05D000566 ORTHO05D008456 3.8e-33 145.2 122 62.3
Zm00001eb162000 Zea mays HOM05D000566 ORTHO05D008456 3.8e-33 145.2 113 68.1
Ah.09g233690 Amaranthus hybridus HOM05D000566 ORTHO05D008456 4.9e-33 144.8 127 62.2
CDE02G2902 Ceratophyllum demersum HOM05D000566 ORTHO05D008456 6.4e-33 144.4 78 91.0
AUR62036584 Chenopodium quinoa HOM05D000566 ORTHO05D008456 8.4e-33 144.1 76 92.1
VMungo0251G1655 Vigna mungo HOM05D000566 ORTHO05D008456 8.4e-33 144.1 109 68.8
A07p11000 Brassica napus HOM05D000566 ORTHO05D008456 1.4e-32 143.3 114 65.8
BraA07t28892Z Brassica rapa HOM05D000566 ORTHO05D008456 1.4e-32 143.3 114 65.8
ECA234G0195 Erigeron canadensis HOM05D000566 ORTHO05D000686 1.4e-32 143.3 80 83.8
Lalb_Chr05g0218771 Lupinus albus HOM05D000566 ORTHO05D008456 1.4e-32 143.3 96 78.1
Medtr4g087750 Medicago truncatula HOM05D000566 ORTHO05D008456 1.4e-32 143.3 91 78.0
BcaB03g13911 Brassica carinata HOM05D000566 ORTHO05D008456 1.9e-32 142.9 114 67.5
PGSC0003DMG401022314 Solanum tuberosum HOM05D000566 ORTHO05D008456 1.9e-32 142.9 79 86.1
Cc02_g14640 Coffea canephora HOM05D000566 ORTHO05D008456 2.4e-32 142.5 78 88.5
HanXRQChr07g0186931 Helianthus annuus HOM05D000566 ORTHO05D008456 2.4e-32 142.5 103 70.9
TPR.G16280 Trifolium pratense HOM05D000566 ORTHO05D008456 2.4e-32 142.5 114 66.7
CAN.G337.143 Capsicum annuum HOM05D000566 ORTHO05D008456 3.2e-32 142.1 79 86.1
DCAR_004017 Daucus carota HOM05D000566 ORTHO05D008456 3.2e-32 142.1 116 64.7
Atru.chr10.1700 Acer truncatum HOM05D000566 ORTHO05D008456 4.2e-32 141.7 97 74.2
Sp1g24970 Schrenkiella parvula HOM05D000566 ORTHO05D008456 5.4e-32 141.4 147 53.7
Medtr4g087740 Medicago truncatula HOM05D000566 ORTHO05D008456 7.1e-32 141.0 96 77.1
Carub.0001s2723 Capsella rubella HOM05D000566 ORTHO05D008456 9.3e-32 140.6 93 74.2
Lsat_1_v5_gn_4_50020 Lactuca sativa HOM05D000566 ORTHO05D008456 9.3e-32 140.6 120 63.3
Lalb_Chr16g0384251 Lupinus albus HOM05D000566 ORTHO05D008456 9.3e-32 140.6 78 88.5
CARHR028250 Cardamine hirsuta HOM05D000566 ORTHO05D008456 1.2e-31 140.2 120 62.5
Aa31LG6G11510 Aethionema arabicum HOM05D000566 ORTHO05D008456 1.6e-31 139.8 117 65.8
AT1G29040 Arabidopsis thaliana HOM05D000566 ORTHO05D008456 2.7e-31 139.0 101 69.3
Nitab4.5_0000206g0050 Nicotiana tabacum HOM05D000566 ORTHO05D008456 3.5e-31 138.7 98 73.5
Os01g0613300 Oryza sativa ssp. japonica HOM05D000566 ORTHO05D008456 3.5e-31 138.7 139 57.6
AL1G42750 Arabidopsis lyrata HOM05D000566 ORTHO05D008456 4.6e-31 138.3 86 77.9
Thhalv10009067m.g Eutrema salsugineum HOM05D000566 ORTHO05D008456 4.6e-31 138.3 90 75.6
HPP92_024140 Vanilla planifolia HOM05D000566 ORTHO05D008456 4.6e-31 138.3 79 87.3
BcaC06g35392 Brassica carinata HOM05D000566 ORTHO05D008456 1.0e-30 137.1 122 60.7
Solyc07g064690.1 Solanum lycopersicum HOM05D000566 ORTHO05D008456 1.0e-30 137.1 79 82.3
Sopen07g032890 Solanum pennellii HOM05D000566 ORTHO05D008456 1.0e-30 137.1 78 83.3
C07p16640 Brassica napus HOM05D000566 ORTHO05D008456 3.0e-30 135.6 137 54.0
BolC7t42164H Brassica oleracea HOM05D000566 ORTHO05D008456 3.0e-30 135.6 122 59.8
Glyma.13G170900 Glycine max HOM05D000566 ORTHO05D008456 2.8e-28 129.0 78 79.5
TWI38G1453 Tripterygium wilfordii HOM05D000566 ORTHO05D008456 2.8e-28 129.0 133 57.1
Lj2A297T108 Lonicera japonica HOM05D000566 ORTHO05D008456 6.2e-28 127.9 157 47.1
Pp3c23_18520 Physcomitrium patens HOM05D000566 ORTHO05D008456 6.2e-28 127.9 77 72.7
VMungo0251G1536 Vigna mungo HOM05D000566 ORTHO05D008456 2.4e-27 125.9 78 75.6
Pp3c24_14610 Physcomitrium patens HOM05D000566 ORTHO05D008456 6.9e-27 124.4 79 69.6
Peaxi162Scf01070g00226 Petunia axillaris HOM05D000566 ORTHO05D008456 4.5e-26 121.7 152 47.4
ATR0602G168 Amborella trichopoda HOM05D000566 ORTHO05D008456 2.2e-25 119.4 105 63.8
Glyma.04G136400 Glycine max HOM05D000566 ORTHO05D008456 3.8e-25 118.6 78 71.8
arahy.Tifrunner.gnm1.ann1.441UHN Arachis hypogaea HOM05D000566 ORTHO05D008456 6.4e-25 117.9 78 71.8
arahy.Tifrunner.gnm1.ann1.AZL87G Arachis hypogaea HOM05D000566 ORTHO05D008456 1.4e-24 116.7 78 70.5
SEGI_28108 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 2.4e-24 115.9 83 68.7
AUR62031167 Chenopodium quinoa HOM05D000566 ORTHO05D008456 2.1e-20 102.8 55 90.9
AagrBONN_evm.TU.Sc2ySwM_344.3192 Anthoceros agrestis HOM05D000566 ORTHO05D008456 2.9e-17 92.4 62 69.4
SEGI_06418 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 3.5e-15 85.5 55 78.2
SEGI_18524 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 6.0e-15 84.7 43 93.0
CSS0020746 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D008456 1.3e-14 83.6 91 53.8
CSS0029795 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D008456 1.3e-14 83.6 91 53.8
MCO02G300 Micromonas commoda HOM05D000566 ORTHO05D008456 1.8e-14 83.2 76 55.3
PRCOL_00004523 Prasinoderma coloniale HOM05D000566 ORTHO05D008456 1.8e-11 73.2 77 48.1
Sed0003601 Sechium edule HOM05D000566 ORTHO05D008456 3.1e-11 72.4 82 53.7
SEGI_34869 Sequoiadendron giganteum HOM05D000566 ORTHO05D008456 5.0e-09 65.1 43 69.8
MBI06_g25984_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D008456 6.5e-09 64.7 51 66.7
Nitab4.5_0010317g0010 Nicotiana tabacum HOM05D000566 ORTHO05D008456 2.3e-06 56.2 32 81.2


User provided reference genes

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