Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 0.0e+00 1107.8 556 100.0
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.5e-246 854.0 558 75.3
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-244 849.7 558 74.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.1e-240 835.1 556 74.1
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.6e-239 832.8 554 75.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-239 831.2 557 74.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-239 831.2 557 74.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.8e-238 828.2 549 74.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-236 823.2 556 75.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.1e-236 822.4 552 73.7
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.0e-235 818.5 552 73.7
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.0e-235 818.1 562 72.4
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.2e-235 817.8 555 74.8
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.1e-232 810.1 549 73.8
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.4e-232 808.9 556 72.7
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 2.4e-232 808.9 552 72.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 9.2e-232 807.0 549 73.4
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-230 802.4 549 72.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.9e-229 799.3 558 71.9
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.5e-226 789.6 550 74.7
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 3.4e-226 788.5 563 70.7
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.3e-225 786.6 572 69.2
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-225 786.2 559 70.1
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.6e-223 779.6 552 72.8
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.6e-223 779.6 560 72.3
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.0e-222 775.4 559 68.9
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.1e-221 773.5 552 71.2
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 2.3e-219 765.8 560 71.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 5.2e-219 764.6 555 70.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.7e-217 758.4 569 67.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.9e-217 758.1 565 67.8
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.4e-216 754.6 559 69.1
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.6e-215 753.1 565 67.4
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.0e-215 752.7 560 69.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.7e-215 752.3 557 69.8
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.1e-213 746.9 563 66.3
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.3e-213 745.0 564 67.2
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.3e-213 745.0 559 69.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.1e-212 740.7 568 66.0
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 8.9e-211 737.3 549 67.8
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.4e-210 735.3 568 65.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.2e-209 732.6 556 68.2
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 5.4e-208 728.0 557 68.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 9.2e-208 727.2 549 67.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.2e-207 726.9 555 65.9
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.2e-207 726.9 551 67.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.5e-207 725.3 553 65.5
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 4.6e-207 724.9 557 65.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 6.0e-207 724.5 549 67.2
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.0e-206 723.8 550 67.6
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.0e-206 723.8 564 64.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.1e-206 721.5 494 74.3
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.6e-206 721.1 560 66.6
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 6.6e-206 721.1 556 65.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.3e-205 717.6 553 67.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 7.3e-205 717.6 560 65.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 9.5e-205 717.2 557 65.0
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 6.2e-204 714.5 552 65.8
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.3e-203 712.6 573 65.4
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.1e-203 712.2 574 64.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 3.1e-203 712.2 431 81.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.2e-203 711.4 569 64.5
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.2e-203 711.4 566 64.3
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-202 709.9 573 64.9
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.6e-202 709.1 573 64.9
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-202 709.1 573 64.9
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 7.6e-202 707.6 572 64.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.3e-201 706.8 576 64.2
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.3e-201 706.8 573 64.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 8.4e-201 704.1 563 63.6
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.9e-200 703.0 559 63.0
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-200 702.6 571 63.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.2e-200 702.2 574 62.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-199 700.3 554 64.8
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.1e-199 699.5 565 63.2
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.0e-198 695.7 577 62.6
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.6e-198 694.5 394 84.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 9.6e-197 690.6 559 64.2
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 2.8e-196 689.1 558 62.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.8e-196 689.1 564 63.1
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-195 687.2 551 65.0
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-195 686.4 589 60.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.4e-195 686.0 570 63.3
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.5e-194 683.3 565 62.7
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.6e-194 682.6 559 62.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.4e-194 682.2 459 72.3
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.4e-194 681.8 573 62.3
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 7.6e-194 681.0 568 63.4
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 9.9e-194 680.6 566 62.0
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 2.9e-193 679.1 551 61.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-192 676.8 557 64.3
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-192 676.0 571 62.7
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 7.1e-192 674.5 557 65.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.6e-191 673.3 569 62.2
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 2.1e-191 672.9 558 63.6
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 3.0e-190 669.1 571 62.0
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-189 666.8 557 61.6
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.3e-189 665.2 558 63.4
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 9.6e-189 664.1 558 62.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 9.6e-189 664.1 557 61.6
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 8.1e-188 661.0 557 61.9
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 6.4e-185 651.4 558 60.9
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.2e-184 648.7 558 60.9
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 9.3e-184 647.5 560 60.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-183 647.1 461 67.7
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.6e-183 646.7 567 59.1
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-183 645.6 558 60.6
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-182 643.7 572 58.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 3.0e-182 642.5 434 73.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-181 639.4 560 62.0
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-179 633.3 569 59.2
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 5.3e-179 631.7 561 58.8
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 8.7e-174 614.4 580 57.4
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-171 607.4 533 60.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.4e-170 602.4 560 56.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 4.9e-169 598.6 551 60.6
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.1e-163 580.9 553 54.8
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-163 580.1 401 69.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 5.9e-162 575.1 519 58.0
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.4e-160 570.5 384 71.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 5.5e-160 568.5 560 55.9
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 2.5e-157 559.7 337 78.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.5e-153 545.0 544 54.8
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.7e-140 503.8 301 80.1
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 7.7e-130 468.4 484 55.0
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.6e-127 460.7 463 46.7
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 5.4e-123 445.7 389 59.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.4e-110 404.4 505 48.9
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 3.5e-106 389.8 315 67.3
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.7e-103 379.4 398 45.0
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-100 369.0 291 64.6
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-94 350.5 197 81.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 8.6e-89 332.0 390 48.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-88 330.1 206 74.3
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-86 325.1 357 50.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.4e-78 298.1 155 91.0
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 3.3e-56 223.8 230 56.5
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 6.2e-55 219.5 199 57.8
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.2e-51 206.8 285 47.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 3.3e-48 197.2 178 64.0
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.3e-48 197.2 293 44.4
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.7e-34 151.0 521 25.5
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-33 149.1 91 76.9
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 8.8e-33 146.0 91 75.8
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.7e-24 116.7 79 68.4
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.4e-22 111.3 115 48.7
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 3.1e-22 110.9 69 76.8
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-21 109.0 69 75.4
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-21 109.0 69 75.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.9e-19 101.7 146 43.2
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 9.4e-19 99.4 180 31.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-14 85.5 58 70.7
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.1e-14 84.0 73 54.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.0e-14 83.2 125 41.6
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.5e-12 76.3 77 53.2
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 8.3e-07 59.7 50 60.0


User provided reference genes

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