Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.5e-51 204.5 94 100.0
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.6e-11 72.8 40 72.5
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.8e-10 69.3 42 64.3
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.0e-09 65.9 56 50.0
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.5e-09 65.5 40 67.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 3.3e-09 65.1 59 47.5
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.3e-09 64.7 40 62.5
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 4.3e-09 64.7 38 68.4
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 7.4e-09 63.9 42 59.5
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.4e-09 63.9 42 59.5
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 7.4e-09 63.9 40 60.0
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 7.4e-09 63.9 47 53.2
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 7.4e-09 63.9 40 62.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 7.4e-09 63.9 40 62.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 9.7e-09 63.5 40 62.5
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 9.7e-09 63.5 40 62.5
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 9.7e-09 63.5 47 53.2
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 9.7e-09 63.5 40 62.5
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-08 63.2 40 65.0
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.3e-08 63.2 40 60.0
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-08 63.2 42 59.5
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.3e-08 63.2 42 59.5
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.3e-08 63.2 47 53.2
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 1.7e-08 62.8 40 62.5
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.7e-08 62.8 58 44.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.7e-08 62.8 62 41.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-08 62.8 59 45.8
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.7e-08 62.8 48 50.0
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 2.8e-08 62.0 40 57.5
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 2.8e-08 62.0 40 62.5
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 2.8e-08 62.0 45 57.8
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.8e-08 62.0 59 47.5
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.8e-08 62.0 47 53.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.8e-08 62.0 58 46.6
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.7e-08 61.6 40 60.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.7e-08 61.6 40 60.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.7e-08 61.6 40 60.0
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 3.7e-08 61.6 40 60.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 3.7e-08 61.6 40 60.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.7e-08 61.6 45 55.6
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 3.7e-08 61.6 59 42.4
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.7e-08 61.6 56 46.4
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 3.7e-08 61.6 40 57.5
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.8e-08 61.2 37 64.9
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 4.8e-08 61.2 40 60.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 4.8e-08 61.2 40 60.0
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 4.8e-08 61.2 40 57.5
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 4.8e-08 61.2 39 61.5
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 4.8e-08 61.2 56 44.6
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 4.8e-08 61.2 40 60.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.8e-08 61.2 39 61.5
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 6.3e-08 60.8 59 45.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 6.3e-08 60.8 59 44.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 8.2e-08 60.5 47 51.1
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.2e-08 60.5 40 60.0
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.2e-08 60.5 47 48.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 8.2e-08 60.5 59 42.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 8.2e-08 60.5 56 44.6
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.1e-07 60.1 59 45.8
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-07 60.1 40 57.5
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.1e-07 60.1 40 57.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-07 60.1 40 60.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-07 60.1 40 60.0
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.1e-07 60.1 40 55.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.4e-07 59.7 40 55.0
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.4e-07 59.7 40 55.0
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.4e-07 58.9 42 54.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.4e-07 58.9 42 54.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.4e-07 58.9 40 60.0
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 2.4e-07 58.9 40 60.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.4e-07 58.9 47 46.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 2.4e-07 58.9 36 63.9
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.4e-07 58.9 40 55.0
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.4e-07 58.9 41 58.5
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.1e-07 58.5 40 57.5
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 3.1e-07 58.5 40 55.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.1e-07 58.5 40 57.5
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 3.1e-07 58.5 40 57.5
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 4.1e-07 58.2 40 57.5
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.1e-07 58.2 47 46.8
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 4.1e-07 58.2 45 53.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.3e-07 57.8 40 57.5
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 6.9e-07 57.4 40 55.0
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 6.9e-07 57.4 40 55.0
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 6.9e-07 57.4 59 44.1
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 6.9e-07 57.4 56 42.9
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.9e-07 57.4 40 57.5
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 9.1e-07 57.0 59 39.0
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 9.1e-07 57.0 40 57.5
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 9.1e-07 57.0 40 55.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 9.1e-07 57.0 59 40.7
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-06 56.6 44 50.0
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 1.2e-06 56.6 45 51.1
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 1.2e-06 56.6 45 53.3
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.5e-06 56.2 40 55.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-06 56.2 38 57.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-06 56.2 38 57.9
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.5e-06 56.2 38 57.9
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.0e-06 55.8 40 55.0
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.0e-06 55.8 59 40.7
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.0e-06 55.8 59 39.0
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.0e-06 55.8 59 39.0
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.0e-06 55.8 43 51.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.4e-06 55.1 40 55.0
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 3.4e-06 55.1 40 55.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.4e-06 55.1 41 53.7
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-06 54.7 40 55.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-06 54.7 40 55.0
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.5e-06 54.7 40 55.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 4.5e-06 54.7 56 42.9
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 5.9e-06 54.3 59 39.0
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 5.9e-06 54.3 59 37.3
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.9e-06 54.3 57 42.1
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 5.9e-06 54.3 41 51.2
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 7.7e-06 53.9 40 52.5
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 7.7e-06 53.9 40 50.0
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.7e-06 53.9 41 51.2
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 7.7e-06 53.9 59 39.0


User provided reference genes

Program Settings