Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 3.0e-44 181.4 89 100.0
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 7.2e-38 160.2 87 86.2
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 4.7e-37 157.5 87 86.2
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 6.1e-37 157.1 87 85.1
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.0e-36 156.4 86 86.0
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.0e-36 156.4 85 87.1
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-36 156.4 85 87.1
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-36 156.4 85 87.1
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.0e-36 156.4 87 85.1
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.4e-36 156.0 87 82.8
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.8e-36 155.6 87 81.6
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.8e-36 155.6 84 88.1
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 2.3e-36 155.2 87 85.1
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.3e-36 155.2 85 85.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 3.0e-36 154.8 85 85.9
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 5.2e-36 154.1 84 86.9
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 5.2e-36 154.1 87 82.8
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 5.2e-36 154.1 84 86.9
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 5.2e-36 154.1 87 82.8
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 5.2e-36 154.1 84 86.9
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.7e-36 153.7 85 84.7
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 8.8e-36 153.3 87 82.8
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-35 152.9 87 82.8
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.1e-35 152.9 87 82.8
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.1e-35 152.9 87 82.8
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.1e-35 152.9 87 82.8
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.5e-35 152.5 87 82.8
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.5e-35 152.5 87 82.8
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.0e-35 152.1 84 86.9
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 2.0e-35 152.1 85 83.5
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.0e-35 152.1 87 82.8
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 2.6e-35 151.8 87 82.8
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 2.6e-35 151.8 87 81.6
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.6e-35 151.8 87 80.5
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 3.3e-35 151.4 84 85.7
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 3.3e-35 151.4 87 80.5
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 4.4e-35 151.0 87 81.6
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 5.7e-35 150.6 87 79.3
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 5.7e-35 150.6 86 82.6
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 7.4e-35 150.2 87 81.6
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 7.4e-35 150.2 85 82.4
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 7.4e-35 150.2 87 80.5
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 9.7e-35 149.8 87 79.3
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 9.7e-35 149.8 87 79.3
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.3e-34 149.4 87 80.5
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.7e-34 149.1 87 81.6
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 1.7e-34 149.1 84 84.5
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.7e-34 149.1 87 78.2
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.2e-34 148.7 84 82.1
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 79.3
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 79.3
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 79.3
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 79.3
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 79.3
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 78.2
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 78.2
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.8e-34 148.3 86 81.4
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.8e-34 148.3 84 83.3
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.8e-34 148.3 87 77.0
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 2.8e-34 148.3 84 82.1
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 2.8e-34 148.3 84 82.1
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-34 147.9 87 78.2
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.8e-34 147.5 87 77.0
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 4.8e-34 147.5 87 79.3
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.8e-34 147.5 87 77.0
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 6.3e-34 147.1 87 77.0
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 8.2e-34 146.7 87 80.5
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 1.1e-33 146.4 87 77.0
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.4e-33 146.0 87 78.2
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 1.4e-33 146.0 87 75.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.4e-33 146.0 84 83.3
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.8e-33 145.6 87 75.9
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-33 145.6 84 81.0
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.8e-33 145.6 84 82.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.8e-33 145.6 87 79.3
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 2.4e-33 145.2 84 81.0
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.4e-33 145.2 87 79.3
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.4e-33 145.2 84 81.0
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 2.4e-33 145.2 87 79.3
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 3.1e-33 144.8 87 75.9
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 3.1e-33 144.8 84 81.0
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 3.1e-33 144.8 84 81.0
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 4.1e-33 144.4 84 79.8
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 4.1e-33 144.4 84 79.8
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.3e-33 144.1 87 74.7
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 5.3e-33 144.1 84 81.0
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 5.3e-33 144.1 87 77.0
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 7.0e-33 143.7 84 78.6
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 9.1e-33 143.3 87 77.0
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 9.1e-33 143.3 87 77.0
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 9.1e-33 143.3 87 77.0
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 9.1e-33 143.3 87 73.6
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 9.1e-33 143.3 87 73.6
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-32 142.9 87 75.9
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.2e-32 142.9 87 77.0
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.2e-32 142.9 87 77.0
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 1.2e-32 142.9 83 79.5
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.6e-32 142.5 87 75.9
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.6e-32 142.5 87 75.9
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.6e-32 142.5 84 78.6
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.6e-32 142.5 84 79.8
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.0e-32 142.1 87 75.9
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.0e-32 142.1 87 73.6
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 2.6e-32 141.7 84 79.8
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 4.5e-32 141.0 84 77.4
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 7.7e-32 140.2 85 76.5
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.3e-31 139.4 74 90.5
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.9e-31 138.3 87 74.7
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 3.8e-31 137.9 84 73.8
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 5.0e-31 137.5 84 76.2
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 1.1e-30 136.3 84 73.8
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-30 136.0 87 69.0
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.5e-30 136.0 76 85.5
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.9e-30 135.6 84 73.8
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 3.6e-29 131.3 84 70.2
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.6e-29 131.3 84 73.8
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 2.3e-28 128.6 84 69.0
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 8.8e-28 126.7 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.6e-27 125.2 84 66.7
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 9.7e-27 123.2 71 81.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.1e-25 119.8 84 66.7
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 7.7e-24 113.6 87 63.2
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 1.0e-20 103.2 103 56.3
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 1.8e-20 102.4 210 34.3
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 8.8e-20 100.1 66 72.7
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 8.3e-18 93.6 54 75.9
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 2.4e-17 92.0 55 74.5
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 4.1e-17 91.3 84 54.8
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 7.0e-17 90.5 53 75.5
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 7.0e-17 90.5 84 51.2
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 7.7e-16 87.0 84 45.2
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.3e-15 86.3 52 71.2
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.9e-15 85.1 84 48.8
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 4.2e-14 81.3 88 47.7
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 5.5e-14 80.9 85 48.2
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.8e-13 78.6 84 42.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-11 73.2 43 76.7
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.5e-11 72.8 47 68.1
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-10 68.6 39 76.9
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 9.2e-09 63.5 85 45.9
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.3e-07 59.7 49 61.2
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.3e-06 55.1 37 67.6


User provided reference genes

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