Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 2.7e-246 854.7 397 100.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 2.9e-216 755.0 394 86.8
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.5e-215 752.7 380 88.9
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.8e-214 748.4 382 89.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 6.8e-213 743.8 380 87.6
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 8.9e-213 743.4 380 87.4
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.5e-212 742.7 380 88.2
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 7.5e-212 740.3 393 86.0
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 8.3e-211 736.9 390 85.1
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.1e-210 736.5 394 84.8
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 3.2e-210 734.9 398 83.9
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 4.1e-210 734.6 380 86.3
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 4.1e-210 734.6 406 82.0
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 5.4e-210 734.2 382 86.1
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 7.0e-210 733.8 394 84.0
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 7.0e-210 733.8 380 87.4
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 1.6e-209 732.6 380 86.8
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.7e-209 731.9 380 87.1
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 3.5e-209 731.5 395 84.8
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 3.5e-209 731.5 376 87.8
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 4.6e-209 731.1 382 85.9
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.0e-208 729.9 415 81.9
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.7e-208 729.2 377 86.7
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.7e-208 729.2 380 86.6
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.7e-208 729.2 382 85.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.7e-208 729.2 390 85.9
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.3e-208 728.8 380 86.3
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.0e-208 727.6 391 84.1
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 8.6e-208 726.9 390 83.8
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.3e-207 724.5 394 83.2
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 5.6e-207 724.2 390 83.3
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.6e-206 722.6 377 86.2
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 4.7e-206 721.1 390 82.8
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 4.7e-206 721.1 394 83.0
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 6.2e-206 720.7 393 82.7
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 8.0e-206 720.3 383 84.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 8.0e-206 720.3 378 84.9
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.8e-205 719.2 380 84.5
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 2.3e-205 718.8 383 84.9
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 2.3e-205 718.8 381 83.7
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 6.8e-205 717.2 378 85.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.0e-204 715.7 376 85.6
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.6e-204 715.3 380 83.7
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 3.4e-204 714.9 377 85.1
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 3.4e-204 714.9 377 85.1
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 7.5e-204 713.8 400 80.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 7.5e-204 713.8 377 84.9
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.8e-204 713.4 378 84.7
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.8e-204 713.4 378 84.7
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 9.8e-204 713.4 378 83.9
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 9.8e-204 713.4 394 83.5
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.3e-203 713.0 377 84.9
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.7e-203 712.6 378 84.7
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 2.9e-203 711.8 383 82.8
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.1e-202 709.9 383 83.0
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.4e-202 709.5 377 84.6
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.9e-202 709.1 376 84.0
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.9e-202 709.1 377 84.1
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 3.2e-202 708.4 377 84.1
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.4e-202 707.6 377 84.6
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.4e-202 707.6 377 84.6
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 5.4e-202 707.6 377 84.1
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 7.0e-202 707.2 415 78.1
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 7.0e-202 707.2 415 78.1
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 7.0e-202 707.2 389 81.7
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 9.2e-202 706.8 384 83.6
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.6e-201 706.1 377 84.1
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.6e-201 706.1 384 81.8
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 2.1e-201 705.7 378 84.1
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 2.7e-201 705.3 428 76.6
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 3.5e-201 704.9 377 84.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 3.5e-201 704.9 377 83.8
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.5e-201 704.9 399 81.2
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 4.6e-201 704.5 378 83.9
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 6.0e-201 704.1 377 84.1
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-200 703.0 378 83.6
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 2.3e-200 702.2 378 83.1
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 3.0e-200 701.8 377 83.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.1e-199 699.9 383 81.5
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.1e-199 699.9 374 84.2
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.9e-199 699.1 385 82.9
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 1.2e-198 696.4 377 82.8
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.4e-197 693.0 377 81.7
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 8.3e-195 683.7 387 79.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.1e-194 683.3 407 77.4
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.9e-192 674.9 380 78.4
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.9e-191 672.5 406 77.1
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 3.6e-190 668.3 387 77.5
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.1e-189 666.8 393 77.6
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 6.8e-189 664.1 381 79.3
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.5e-185 651.7 415 74.0
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.0e-184 650.2 380 78.7
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.1e-181 640.2 378 74.9
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 3.1e-181 638.6 382 76.7
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 6.9e-181 637.5 389 73.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.1e-174 615.9 399 70.9
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.8e-173 612.8 347 79.8
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 1.1e-165 587.0 376 70.7
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.3e-163 580.1 378 72.0
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.5e-162 574.7 378 72.2
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 6.2e-158 561.2 381 69.8
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 2.4e-149 532.7 352 71.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 5.0e-147 525.0 377 65.3
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 8.8e-144 514.2 395 63.3
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.2e-138 495.4 245 89.4
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 6.7e-136 488.0 276 80.1
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.0e-135 486.5 265 81.9
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 3.1e-133 479.2 239 88.3
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.9e-122 443.4 225 86.7
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 6.8e-80 302.0 196 73.0
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.3e-74 283.1 173 75.7
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 3.4e-71 273.1 177 70.6
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.1e-68 263.8 132 87.1
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.5e-66 257.7 133 85.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 2.8e-65 253.4 135 85.9
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 4.4e-63 246.1 134 82.8
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 1.3e-62 244.6 216 59.7
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.8e-56 224.2 266 49.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.1e-50 204.9 116 77.6
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.2e-47 194.9 119 74.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 5.8e-47 192.6 249 48.6
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 3.1e-40 170.2 80 91.2
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 5.0e-38 162.9 162 52.5
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 5.3e-24 116.3 61 82.0
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 3.4e-23 113.6 181 39.8
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.9e-23 112.8 105 55.2
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 3.8e-22 110.2 62 74.2
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.4e-16 90.9 68 61.8
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.1e-10 72.0 58 58.6
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.8e-09 66.6 34 79.4
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 7.0e-08 62.8 38 71.1
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.6e-07 60.8 29 86.2


User provided reference genes

Program Settings