Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04240 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.8e-54 215.7 110 100.0
Nn1g02666 Nelumbo nucifera HOM05D000170 ORTHO05D018666 9.2e-27 123.6 90 74.4
Nn1g08779 Nelumbo nucifera HOM05D000170 ORTHO05D018666 6.0e-26 120.9 90 73.3
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 7.6e-21 104.0 63 85.7
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.7e-17 92.8 63 74.6
Nn1g01182 Nelumbo nucifera HOM05D000170 ORTHO05D007205 3.3e-16 88.6 63 71.4
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 7.3e-16 87.4 61 72.1
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 2.1e-15 85.9 62 71.0
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 3.6e-15 85.1 62 67.7
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 8.1e-15 84.0 66 72.7
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 1.4e-14 83.2 66 69.7
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 1.8e-14 82.8 58 70.7
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 2.4e-14 82.4 61 67.2
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 3.1e-14 82.0 58 69.0
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 3.1e-14 82.0 59 74.6
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 4.0e-14 81.6 64 68.8
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 5.2e-14 81.3 65 67.7
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 6.9e-14 80.9 64 68.8
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 6.9e-14 80.9 65 70.8
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 6.9e-14 80.9 65 70.8
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 6.9e-14 80.9 65 70.8
Dinv37352 Davidia involucrata HOM05D000170 ORTHO05D007205 9.0e-14 80.5 57 73.7
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 1.2e-13 80.1 80 56.2
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 1.2e-13 80.1 61 68.9
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 1.5e-13 79.7 63 65.1
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 1.5e-13 79.7 65 69.2
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 2.0e-13 79.3 80 52.5
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 2.0e-13 79.3 63 65.1
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 2.0e-13 79.3 60 66.7
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 3.4e-13 78.6 68 66.2
FAN05G1040 Fragaria x ananassa HOM05D000170 ORTHO05D007205 3.4e-13 78.6 65 69.2
FAN05G4883 Fragaria x ananassa HOM05D000170 ORTHO05D007205 3.4e-13 78.6 65 69.2
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 3.4e-13 78.6 61 67.2
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 4.4e-13 78.2 78 56.4
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 4.4e-13 78.2 66 63.6
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 7.6e-13 77.4 67 62.7
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 7.6e-13 77.4 63 63.5
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 1.3e-12 76.6 60 66.7
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 1.3e-12 76.6 62 61.3
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 1.3e-12 76.6 63 61.9
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 1.3e-12 76.6 66 63.6
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 1.7e-12 76.3 60 68.3
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 1.7e-12 76.3 71 60.6
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 1.7e-12 76.3 61 59.0
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 2.2e-12 75.9 60 66.7
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 2.9e-12 75.5 76 53.9
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 3.8e-12 75.1 97 48.5
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 3.8e-12 75.1 97 48.5
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 3.8e-12 75.1 63 61.9
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 3.8e-12 75.1 66 63.6
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 4.9e-12 74.7 64 62.5
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 4.9e-12 74.7 61 70.5
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 4.9e-12 74.7 63 61.9
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 4.9e-12 74.7 84 53.6
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 1.1e-11 73.6 63 60.3
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 1.4e-11 73.2 63 60.3
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 1.4e-11 73.2 69 62.3
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 1.9e-11 72.8 68 60.3
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 1.9e-11 72.8 60 65.0
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 2.4e-11 72.4 65 60.0
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 3.2e-11 72.0 66 57.6
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 5.4e-11 71.2 85 50.6
Psat3g060280 Pisum sativum HOM05D000170 ORTHO05D007205 5.4e-11 71.2 61 59.0
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 7.1e-11 70.9 59 64.4
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 7.1e-11 70.9 86 51.2
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 7.1e-11 70.9 66 60.6
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 9.3e-11 70.5 61 60.7
Psat3g060200 Pisum sativum HOM05D000170 ORTHO05D007205 1.2e-10 70.1 61 59.0
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 1.6e-10 69.7 64 62.5
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 2.1e-10 69.3 64 60.9
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 2.7e-10 68.9 66 59.1
Nn4g25725 Nelumbo nucifera HOM05D000170 ORTHO05D018666 3.5e-10 68.6 40 85.0
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 4.6e-10 68.2 61 55.7
Sopen10g035240 Solanum pennellii HOM05D000170 ORTHO05D007205 4.6e-10 68.2 65 55.4
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 6.0e-10 67.8 64 62.5
Peaxi162Scf00017g00118 Petunia axillaris HOM05D000170 ORTHO05D007205 1.0e-09 67.0 122 41.8
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 1.3e-09 66.6 65 58.5
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 1.7e-09 66.2 67 56.7
arahy.Tifrunner.gnm1.ann1.BIS5KZ Arachis hypogaea HOM05D000170 ORTHO05D007205 2.3e-09 65.9 60 55.0
Ca_16937_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 2.3e-09 65.9 60 58.3
Medtr3g096050 Medicago truncatula HOM05D000170 ORTHO05D007205 2.3e-09 65.9 81 42.0
arahy.Tifrunner.gnm1.ann1.D2PEMM Arachis hypogaea HOM05D000170 ORTHO05D007205 3.0e-09 65.5 60 55.0
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 3.0e-09 65.5 67 56.7
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 3.0e-09 65.5 63 58.7
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 6.6e-09 64.3 58 56.9
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 6.6e-09 64.3 67 55.2
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 6.6e-09 64.3 67 55.2
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 6.6e-09 64.3 67 55.2
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 6.6e-09 64.3 65 58.5
TPR.G34644 Trifolium pratense HOM05D000170 ORTHO05D007205 6.6e-09 64.3 61 54.1
Nn2g10706 Nelumbo nucifera HOM05D000170 ORTHO05D018666 8.7e-09 63.9 48 68.8
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.1e-08 63.5 58 55.2
BcaB02g08534 Brassica carinata HOM05D000170 ORTHO05D007205 1.1e-08 63.5 68 55.9
Medtr3g096070 Medicago truncatula HOM05D000170 ORTHO05D007205 7.3e-08 60.8 61 50.8
AUR62029078 Chenopodium quinoa HOM05D000170 ORTHO05D007205 9.6e-08 60.5 60 53.3
CDE06G0899 Ceratophyllum demersum HOM05D000170 ORTHO05D007205 4.8e-07 58.2 60 55.0
AUR62026973 Chenopodium quinoa HOM05D000170 ORTHO05D007205 4.8e-07 58.2 60 51.7
EL10Ac7g16712 Beta vulgaris HOM05D000170 ORTHO05D007205 6.9e-06 54.3 60 48.3
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 6.9e-06 54.3 30 86.7


User provided reference genes

Program Settings