Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 6.3e-57 223.8 106 100.0
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 9.2e-40 166.8 103 75.7
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 2.1e-36 155.6 103 73.8
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 3.6e-36 154.8 101 74.3
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 2.3e-35 152.1 100 70.0
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.3e-35 152.1 102 66.7
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 2.3e-35 152.1 102 66.7
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 4.0e-35 151.4 102 71.6
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.0e-34 149.1 99 72.7
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 2.6e-34 148.7 100 68.0
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 3.4e-34 148.3 100 69.0
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 5.7e-34 147.5 100 70.0
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 7.5e-34 147.1 102 69.6
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 7.5e-34 147.1 102 70.6
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 1.3e-33 146.4 102 68.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.9e-33 145.2 104 66.3
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 3.7e-33 144.8 100 67.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 4.9e-33 144.4 102 69.6
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 4.9e-33 144.4 104 69.2
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 4.9e-33 144.4 104 66.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 1.4e-32 142.9 102 69.6
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.2e-32 141.7 98 65.3
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 4.1e-32 141.4 99 65.7
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 4.1e-32 141.4 100 68.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 9.2e-32 140.2 100 66.0
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 1.2e-31 139.8 100 67.0
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.6e-31 139.4 100 65.0
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.0e-31 139.0 102 64.7
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.7e-31 138.7 100 65.0
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 3.5e-31 138.3 100 65.0
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 2.3e-30 135.6 100 63.0
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 1.9e-29 132.5 100 60.0
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.5e-29 132.1 100 65.0
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 5.6e-29 131.0 100 65.0
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 5.6e-29 131.0 100 65.0
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.6e-28 129.4 103 60.2
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.1e-28 129.0 100 64.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 2.8e-28 128.6 100 61.0
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 2.8e-28 128.6 100 63.0
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 4.7e-28 127.9 100 60.0
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 4.7e-28 127.9 100 60.0
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 6.2e-28 127.5 100 64.0
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 5.2e-27 124.4 102 57.8
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 5.2e-27 124.4 100 60.0
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 5.2e-27 124.4 100 61.0
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 8.9e-27 123.6 102 59.8
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.2e-26 123.2 102 57.8
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.5e-26 122.9 104 55.8
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 1.5e-26 122.9 104 61.5
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 1.5e-26 122.9 100 60.0
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.6e-26 122.1 102 57.8
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.6e-26 122.1 102 57.8
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 2.6e-26 122.1 102 57.8
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 5.8e-26 120.9 104 55.8
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.7e-25 119.4 101 55.4
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 2.2e-25 119.0 99 53.5
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.1e-24 116.7 102 59.8
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.2e-24 115.2 100 54.0
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.2e-24 115.2 100 54.0
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 4.1e-24 114.8 102 56.9
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 4.1e-24 114.8 102 52.9
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 9.2e-24 113.6 102 52.9
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 9.2e-24 113.6 102 52.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 2.0e-23 112.5 102 52.0
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.0e-23 112.5 97 58.8
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 3.5e-23 111.7 96 59.4
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 4.6e-23 111.3 102 52.0
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 7.8e-23 110.5 101 55.4
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 2.3e-22 109.0 101 54.5
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 3.9e-22 108.2 102 52.0
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 6.6e-22 107.5 100 56.0
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.5e-21 106.3 102 50.0
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.5e-21 106.3 104 54.8
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.5e-21 106.3 100 53.0
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 3.3e-21 105.1 102 49.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 2.8e-20 102.1 102 51.0
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 3.6e-20 101.7 102 49.0
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 8.1e-20 100.5 100 49.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 2.3e-19 99.0 101 48.5
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 8.3e-17 90.5 74 58.1
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 3.0e-14 82.0 76 61.8
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 9.5e-13 77.0 101 40.6
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 4.0e-11 71.6 107 39.3
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.1e-08 63.5 49 61.2


User provided reference genes

Program Settings