Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 9.4e-93 343.6 183 100.0
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 4.9e-73 278.1 185 82.2
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 4.7e-60 235.0 181 72.9
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 2.3e-59 232.6 183 74.3
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 1.5e-58 229.9 188 71.3
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 6.4e-57 224.6 175 71.4
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 6.4e-57 224.6 175 71.4
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 8.3e-57 224.2 184 69.0
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 1.1e-56 223.8 175 70.9
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.1e-56 223.8 170 74.1
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 1.4e-56 223.4 176 72.2
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 1.9e-56 223.0 173 72.8
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 2.4e-56 222.6 180 70.6
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 3.2e-56 222.2 175 70.9
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 5.4e-56 221.5 177 68.9
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 5.4e-56 221.5 194 68.0
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 5.4e-56 221.5 175 70.3
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 9.2e-56 220.7 184 67.9
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 1.2e-55 220.3 158 77.2
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 2.1e-55 219.5 149 80.5
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 4.6e-55 218.4 180 69.4
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 6.0e-55 218.0 178 69.1
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 1.7e-54 216.5 175 70.9
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 3.0e-54 215.7 177 70.1
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 3.9e-54 215.3 179 67.0
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 5.1e-54 214.9 173 67.6
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 8.6e-54 214.2 142 81.0
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 8.6e-54 214.2 176 68.8
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.1e-53 213.8 175 68.6
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 1.1e-53 213.8 176 67.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.1e-53 213.8 181 69.6
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 1.5e-53 213.4 173 67.1
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 1.5e-53 213.4 173 67.1
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 1.9e-53 213.0 180 67.8
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 2.5e-53 212.6 182 67.6
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 2.5e-53 212.6 160 74.4
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 2.5e-53 212.6 181 69.6
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 3.3e-53 212.2 181 69.6
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 4.3e-53 211.8 174 67.2
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 7.3e-53 211.1 179 68.7
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 9.5e-53 210.7 177 68.4
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 1.2e-52 210.3 177 66.1
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 2.1e-52 209.5 177 68.4
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 3.6e-52 208.8 180 67.8
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 4.7e-52 208.4 180 66.7
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 6.2e-52 208.0 177 65.5
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 8.1e-52 207.6 175 65.7
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 1.4e-51 206.8 179 69.8
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.4e-51 206.8 174 66.7
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.4e-51 206.1 172 70.9
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 8.9e-51 204.1 161 72.7
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 2.0e-50 203.0 177 66.7
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 5.8e-50 201.4 174 66.1
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 1.7e-49 199.9 178 66.3
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 1.7e-49 199.9 177 65.5
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 1.4e-48 196.8 170 68.8
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 2.4e-48 196.1 181 63.0
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 2.4e-48 196.1 188 61.2
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 4.1e-48 195.3 211 57.8
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 7.1e-48 194.5 177 66.7
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 2.7e-47 192.6 178 62.9
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 7.8e-47 191.0 170 66.5
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.3e-46 190.3 181 62.4
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 1.3e-46 190.3 169 63.3
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 1.7e-46 189.9 154 71.4
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.7e-46 189.9 196 58.2
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 3.0e-46 189.1 168 63.1
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 3.0e-46 189.1 178 64.6
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 3.9e-46 188.7 183 59.6
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.1e-45 187.2 191 59.2
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.1e-45 187.2 124 83.1
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 2.5e-45 186.0 188 58.5
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 2.5e-45 186.0 188 58.5
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.5e-45 186.0 177 62.7
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 2.5e-45 186.0 177 62.7
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 2.5e-45 186.0 170 65.9
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 3.3e-45 185.7 190 58.4
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 3.3e-45 185.7 191 60.7
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 5.6e-45 184.9 192 60.4
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 9.6e-45 184.1 180 60.0
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 9.6e-45 184.1 185 59.5
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 9.6e-45 184.1 178 60.1
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 1.2e-44 183.7 179 62.6
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 3.6e-44 182.2 190 59.5
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 4.7e-44 181.8 195 56.4
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 4.7e-44 181.8 195 56.4
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 4.7e-44 181.8 195 56.4
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 4.7e-44 181.8 177 58.8
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 1.1e-43 180.6 195 56.4
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 1.8e-43 179.9 178 61.2
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 1.8e-43 179.9 175 60.6
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 3.1e-43 179.1 192 57.8
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 5.2e-43 178.3 135 71.1
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 5.2e-43 178.3 178 60.7
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 5.2e-43 178.3 170 61.8
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 6.9e-43 177.9 178 60.1
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 9.0e-43 177.6 192 56.8
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 1.2e-42 177.2 118 81.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 3.4e-42 175.6 126 74.6
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 7.6e-42 174.5 126 73.8
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 7.6e-42 174.5 126 73.8
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 1.7e-41 173.3 120 77.5
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 1.7e-41 173.3 263 45.6
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 2.2e-41 172.9 199 54.8
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 2.2e-41 172.9 175 61.7
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 6.4e-41 171.4 128 73.4
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 9.3e-40 167.5 174 56.9
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 1.6e-39 166.8 169 57.4
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 4.3e-37 158.7 174 55.2
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 2.9e-33 146.0 112 72.3
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 2.7e-31 139.4 146 58.9
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 3.3e-29 132.5 170 50.6
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 9.6e-29 131.0 114 64.9
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 2.8e-28 129.4 343 33.8
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.1e-27 127.5 132 59.1
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 5.3e-27 125.2 187 48.1
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 1.4e-24 117.1 164 45.1
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.4e-24 116.3 105 62.9
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 2.1e-23 113.2 80 72.5
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 3.5e-23 112.5 148 48.6
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 1.8e-22 110.2 144 51.4
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 1.5e-21 107.1 106 60.4
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 1.7e-17 93.6 83 62.7
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 1.1e-16 90.9 110 55.5
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.4e-16 90.5 66 78.8
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 4.6e-15 85.5 106 50.0
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 1.8e-14 83.6 112 50.9
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 8.2e-12 74.7 91 47.3
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.4e-08 63.9 50 76.0
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 5.5e-08 62.0 80 50.0


User provided reference genes

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