Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04202 Nelumbo nucifera HOM05D000029 ORTHO05D002586 5.8e-35 150.2 69 100.0
Nn8g40364 Nelumbo nucifera HOM05D000029 ORTHO05D002586 2.3e-28 128.3 69 87.0
Nn8g40362 Nelumbo nucifera HOM05D000029 ORTHO05D002586 2.6e-19 98.2 69 68.1
Nn2g12617 Nelumbo nucifera HOM05D000029 ORTHO05D002586 1.6e-13 79.0 56 62.5
TAR559G0001 Trochodendron aralioides HOM05D000029 ORTHO05D002586 3.6e-13 77.8 64 57.8
TAR625G0481 Trochodendron aralioides HOM05D000029 ORTHO05D002586 3.6e-13 77.8 64 57.8
TAR625G0533 Trochodendron aralioides HOM05D000029 ORTHO05D002586 4.8e-13 77.4 59 57.6
Potri.008G007600 Populus trichocarpa HOM05D000029 ORTHO05D002586 1.4e-12 75.9 65 53.8
MSTRG.22507 Avicennia marina HOM05D000029 ORTHO05D002586 4.2e-09 64.3 69 47.8
CSS0039856 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002586 4.2e-09 64.3 58 51.7
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 4.2e-09 64.3 55 47.3
AUR62006627 Chenopodium quinoa HOM05D000029 ORTHO05D002586 5.4e-09 63.9 59 44.1
Oeu049651.1 Olea europaea HOM05D001909 ORTHO05D007079 5.4e-09 63.9 60 51.7
Rhsim08G0247000 Rhododendron simsii HOM05D000029 ORTHO05D002586 1.2e-08 62.8 56 50.0
Zm00001eb040920 Zea mays HOM05D000029 ORTHO05D002586 1.6e-08 62.4 53 43.4
CSS0034964 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D018350 2.1e-08 62.0 58 50.0
Aqoxy6G02372 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 2.7e-08 61.6 52 50.0
Sc02g0006120 Simmondsia chinensis HOM05D000029 ORTHO05D002586 2.7e-08 61.6 46 52.2
AUR62000279 Chenopodium quinoa HOM05D000029 ORTHO05D002586 3.5e-08 61.2 56 42.9
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 4.6e-08 60.8 54 46.3
Medtr5g087370 Medicago truncatula HOM05D000029 ORTHO05D002586 6.0e-08 60.5 53 49.1
Phvul.011G166400 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 6.0e-08 60.5 59 52.5
Sed0011450 Sechium edule HOM05D000029 ORTHO05D002586 7.9e-08 60.1 64 46.9
Medtr5g087350 Medicago truncatula HOM05D000029 ORTHO05D002586 1.0e-07 59.7 58 46.6
EL10Ac4g10016 Beta vulgaris HOM05D000029 ORTHO05D002586 1.3e-07 59.3 58 46.6
Psat6g171960 Pisum sativum HOM05D000029 ORTHO05D002586 1.3e-07 59.3 57 50.9
MBI16_g00669_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002586 1.8e-07 58.9 58 43.1
Lj5C25G7 Lonicera japonica HOM05D000029 ORTHO05D002586 3.0e-07 58.2 43 55.8
Medtr1g090520 Medicago truncatula HOM05D000029 ORTHO05D002586 3.0e-07 58.2 71 42.3
Prupe.3G167900 Prunus persica HOM05D000029 ORTHO05D002586 3.9e-07 57.8 62 48.4
QL10p030477 Quercus lobata HOM05D000029 ORTHO05D002586 3.9e-07 57.8 58 46.6
SalBow6G1033 Salvia bowleyana HOM05D000029 ORTHO05D002586 3.9e-07 57.8 55 47.3
vmacro18700 Vaccinium macrocarpon HOM05D000029 ORTHO05D002586 3.9e-07 57.8 64 43.8
Ah.04g159190 Amaranthus hybridus HOM05D000029 ORTHO05D002586 5.1e-07 57.4 48 45.8
Manes.16G045200 Manihot esculenta HOM05D000029 ORTHO05D002586 5.1e-07 57.4 65 44.6
TPR.G31191 Trifolium pratense HOM05D000029 ORTHO05D002586 5.1e-07 57.4 55 49.1
ATR0580G151 Amborella trichopoda HOM05D000029 ORTHO05D002586 6.7e-07 57.0 41 58.5
Haze_18878 Corylus avellana HOM05D000029 ORTHO05D002586 6.7e-07 57.0 57 47.4
Os08g0446400 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D001118 6.7e-07 57.0 54 42.6
Potri.008G009300 Populus trichocarpa HOM05D000029 ORTHO05D002586 6.7e-07 57.0 57 47.4
SGA_v2.0_scaffold71G24014 Striga asiatica HOM05D000029 ORTHO05D002586 6.7e-07 57.0 58 44.8
TWI39G1249 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 6.7e-07 57.0 56 46.4
VMungo1127G0087 Vigna mungo HOM05D000029 ORTHO05D002586 6.7e-07 57.0 59 49.2
Hma1.2p1_1104F.1_g257410 Hydrangea macrophylla HOM05D000029 ORTHO05D002586 8.7e-07 56.6 60 45.0
Rhsim01G0086400 Rhododendron simsii HOM05D000029 ORTHO05D002586 8.7e-07 56.6 58 51.7
TWI23G0691 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 8.7e-07 56.6 57 47.4
arahy.Tifrunner.gnm1.ann1.UC5N5L Arachis hypogaea HOM05D000029 ORTHO05D002586 1.1e-06 56.2 57 47.4
CANSAT01G2271 Cannabis sativa HOM05D000029 ORTHO05D002586 1.5e-06 55.8 63 46.0
Hund21921 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.5e-06 55.8 51 45.1
TPR.G29920 Trifolium pratense HOM05D000029 ORTHO05D002586 1.5e-06 55.8 55 50.9
Cfa021397 Carpinus fangiana HOM05D000029 ORTHO05D002586 1.9e-06 55.5 64 40.6
Nitab4.5_0001691g0080 Nicotiana tabacum HOM05D000029 ORTHO05D002586 1.9e-06 55.5 66 40.9
FAN02G2390 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.5e-06 55.1 58 50.0
FAN09G2714 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.5e-06 55.1 58 50.0
Lj3g0017714 Lotus japonicus HOM05D000029 ORTHO05D002586 2.5e-06 55.1 48 52.1
Os08g0446200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D002586 2.5e-06 55.1 41 48.8
Hund21922 Selenicereus undatus HOM05D000029 ORTHO05D002586 2.5e-06 55.1 51 41.2
GSVIVG01016126001 Vitis vinifera HOM05D000029 ORTHO05D002586 2.5e-06 55.1 55 41.8
Lsat_1_v5_gn_4_88801 Lactuca sativa HOM05D000029 ORTHO05D002586 4.3e-06 54.3 51 39.2
FvH4_6g37430 Fragaria vesca HOM05D000029 ORTHO05D002586 5.6e-06 53.9 58 50.0
FAN14G3707 Fragaria x ananassa HOM05D000029 ORTHO05D002586 5.6e-06 53.9 58 50.0
Medtr5g087360 Medicago truncatula HOM05D000029 ORTHO05D002586 7.4e-06 53.5 55 47.3
Prupe.3G167800 Prunus persica HOM05D000029 ORTHO05D002586 7.4e-06 53.5 64 45.3
Ciclev10024756m.g Citrus clementina HOM05D000029 ORTHO05D002586 9.6e-06 53.1 67 44.8
RhsimUnG0089600 Rhododendron simsii HOM05D000029 ORTHO05D002586 9.6e-06 53.1 58 50.0
Sabra08G0005300 Salix brachista HOM05D000029 ORTHO05D002586 9.6e-06 53.1 57 43.9
SEGI_16285 Sequoiadendron giganteum HOM05D000168 ORTHO05D001351 9.6e-06 53.1 45 46.7


User provided reference genes

Program Settings