Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.6e-202 709.1 348 100.0
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.4e-183 643.7 343 90.4
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 4.2e-182 641.3 343 88.3
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.6e-181 637.9 343 88.9
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 7.3e-179 630.6 343 87.2
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 6.2e-178 627.5 343 87.2
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.8e-177 625.9 343 86.9
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 5.3e-177 624.4 343 86.9
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 2.0e-176 622.5 343 86.6
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.4e-176 621.7 343 86.6
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.6e-176 620.5 343 86.6
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.6e-176 620.5 343 86.6
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.3e-175 619.8 343 86.3
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 1.7e-175 619.4 343 85.7
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.7e-175 619.4 346 85.0
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.7e-175 619.4 341 85.9
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 3.8e-175 618.2 343 85.4
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 3.8e-175 618.2 343 85.1
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 3.8e-175 618.2 341 84.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 8.4e-175 617.1 343 84.5
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.1e-174 616.7 343 84.8
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 1.4e-174 616.3 341 85.6
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 4.2e-174 614.8 343 85.1
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 9.3e-174 613.6 343 84.5
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.2e-173 613.2 356 83.1
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 1.6e-173 612.8 347 82.4
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.6e-173 612.8 346 83.2
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.6e-173 612.8 346 85.3
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 4.6e-173 611.3 343 84.8
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 4.6e-173 611.3 343 84.3
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 7.9e-173 610.5 343 83.7
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 1.0e-172 610.1 343 84.0
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 1.0e-172 610.1 343 84.0
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.0e-172 610.1 343 83.7
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.8e-172 609.4 344 83.1
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 3.0e-172 608.6 343 82.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 3.0e-172 608.6 343 83.4
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 6.7e-172 607.4 343 83.7
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 6.7e-172 607.4 343 81.9
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 6.7e-172 607.4 360 81.9
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 8.7e-172 607.1 343 83.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.1e-171 606.7 362 82.9
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.5e-171 606.3 346 84.4
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.5e-171 606.3 343 83.1
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.9e-171 605.9 341 83.9
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 2.5e-171 605.5 343 82.8
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.5e-171 605.5 343 84.0
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 4.3e-171 604.7 343 81.9
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 7.4e-171 604.0 343 83.4
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 9.6e-171 603.6 341 84.2
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 9.6e-171 603.6 344 82.3
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 9.6e-171 603.6 341 84.5
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 1.3e-170 603.2 342 82.7
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.6e-170 602.8 343 81.9
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 2.1e-170 602.4 341 83.9
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.8e-170 602.1 343 83.7
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.8e-170 602.1 344 82.0
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 2.8e-170 602.1 343 82.2
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.1e-169 600.1 343 81.0
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.4e-169 599.7 341 83.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 1.8e-169 599.4 343 81.3
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.8e-169 599.4 341 83.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 2.4e-169 599.0 344 80.8
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 4.0e-169 598.2 343 83.1
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.0e-169 598.2 341 83.3
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.9e-169 597.4 343 82.8
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 6.9e-169 597.4 343 81.0
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.2e-168 596.7 341 82.4
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.5e-168 596.3 342 82.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.5e-168 596.3 344 82.0
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.0e-168 595.9 341 83.3
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 2.6e-168 595.5 343 81.6
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.4e-168 595.1 343 81.6
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.5e-168 594.7 341 80.9
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 7.6e-168 594.0 343 81.6
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.0e-167 593.6 337 83.7
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.7e-167 592.8 341 82.1
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 3.8e-167 591.7 341 82.1
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.8e-167 591.7 341 82.1
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 8.4e-167 590.5 341 81.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.4e-166 589.7 341 82.7
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.9e-166 589.3 343 81.0
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.5e-166 589.0 342 80.7
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 4.2e-166 588.2 341 81.5
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 4.2e-166 588.2 341 82.1
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.5e-166 587.8 343 80.8
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 7.1e-166 587.4 343 80.8
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.8e-164 582.8 318 86.5
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 3.0e-164 582.0 356 78.7
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.0e-164 582.0 343 80.5
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 6.7e-164 580.9 343 79.6
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 5.7e-163 577.8 357 77.6
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 3.7e-162 575.1 342 81.0
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 8.2e-162 573.9 432 66.4
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.4e-161 573.2 343 81.0
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.4e-161 573.2 343 79.9
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.8e-160 567.8 390 71.5
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.0e-159 567.0 358 78.2
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 3.0e-156 555.4 446 63.5
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 5.1e-156 554.7 346 75.4
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 5.7e-155 551.2 350 76.3
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 3.4e-152 542.0 355 73.2
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 9.4e-150 533.9 304 82.6
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 2.3e-148 529.3 343 76.7
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 5.7e-147 524.6 341 73.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 2.8e-146 522.3 341 75.4
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 3.1e-145 518.8 345 71.0
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.0e-144 516.2 339 72.0
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.0e-139 499.6 270 88.1
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 6.7e-132 474.6 345 69.6
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 9.1e-129 464.2 326 66.3
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.0e-127 460.7 255 83.1
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 6.8e-124 448.0 254 82.3
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 5.4e-121 438.3 311 69.8
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.2e-120 437.2 311 69.5
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 3.5e-120 435.6 339 61.4
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.9e-120 434.9 383 60.6
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 3.7e-114 415.6 233 81.5
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.7e-111 406.8 315 66.3
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 7.3e-110 401.4 228 84.2
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.5e-107 393.7 339 55.8
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.4e-105 386.3 345 60.9
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 3.9e-103 379.0 249 72.7
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 6.0e-96 355.1 254 71.3
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.3e-95 353.2 341 52.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 4.7e-93 345.5 339 50.1
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.3e-90 337.4 189 86.2
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 3.7e-90 335.9 190 84.7
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 6.0e-80 302.0 172 82.6
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 3.1e-76 289.7 218 67.4
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 5.6e-62 242.3 151 75.5
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 8.4e-58 228.4 134 83.6
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 6.2e-53 212.2 114 86.0
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.4e-52 210.3 346 38.7
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.5e-51 207.6 114 80.7
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.1e-41 174.9 94 86.2
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 3.2e-41 173.3 248 44.0
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.6e-40 171.0 99 83.8
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.6e-35 153.7 363 32.0
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 2.5e-25 120.6 81 74.1
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 3.0e-23 113.6 263 33.5
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.2e-23 112.8 95 58.9
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.7e-22 108.6 169 42.6
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 7.7e-19 99.0 87 58.6
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 6.3e-13 79.3 45 80.0
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 3.5e-11 73.6 41 75.6


User provided reference genes

Program Settings