Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 6.8e-176 620.5 311 100.0
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.7e-150 536.2 301 89.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.3e-147 525.8 299 87.3
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 4.3e-146 521.5 301 86.4
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.4e-141 505.8 298 82.6
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.2e-140 503.4 306 81.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 4.6e-140 501.5 299 84.6
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 4.6e-140 501.5 306 82.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.8e-140 500.7 296 83.8
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.3e-139 500.0 310 80.3
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.7e-139 499.6 296 83.4
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.3e-139 499.2 306 80.4
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 5.1e-139 498.0 296 84.1
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 6.6e-139 497.7 296 83.4
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.6e-139 497.7 290 85.5
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.1e-138 496.9 296 83.1
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.5e-138 496.5 290 84.5
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.5e-138 495.7 288 85.1
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 4.3e-138 495.0 290 85.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.3e-138 495.0 297 82.5
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 5.6e-138 494.6 300 82.7
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 5.6e-138 494.6 281 87.2
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 7.3e-138 494.2 308 80.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 7.3e-138 494.2 282 87.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-137 493.4 296 82.4
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-137 493.4 285 85.6
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.3e-137 493.4 283 86.2
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.3e-137 493.4 298 81.5
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.6e-137 493.0 285 85.3
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-137 493.0 285 85.3
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-137 493.0 285 85.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.6e-137 493.0 302 80.8
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.6e-137 493.0 281 87.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.1e-137 492.7 296 81.8
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.1e-137 492.7 304 81.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.6e-137 491.9 288 84.0
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 4.8e-137 491.5 290 84.5
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 4.8e-137 491.5 282 87.2
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 8.1e-137 490.7 305 80.7
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.1e-136 490.3 296 82.1
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.4e-136 490.0 282 85.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 1.4e-136 490.0 297 82.2
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.8e-136 489.6 305 81.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.4e-136 489.2 285 85.3
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.1e-136 488.8 287 84.7
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.0e-136 488.4 299 81.9
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.0e-136 488.4 288 83.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 5.3e-136 488.0 286 86.0
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 5.3e-136 488.0 282 85.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.3e-136 488.0 298 81.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-135 486.5 292 82.9
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.5e-135 486.5 286 84.6
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.5e-135 486.5 287 83.6
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.0e-135 486.1 283 85.2
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.5e-135 485.0 286 84.3
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 4.5e-135 485.0 299 81.6
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.8e-135 484.6 290 83.1
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 5.8e-135 484.6 303 79.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 5.8e-135 484.6 304 78.9
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 9.9e-135 483.8 299 79.9
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 9.9e-135 483.8 290 82.4
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 9.9e-135 483.8 286 85.3
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-134 483.4 285 82.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.7e-134 483.0 295 81.4
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.7e-134 483.0 296 80.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 3.8e-134 481.9 290 81.4
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 3.8e-134 481.9 297 81.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 3.8e-134 481.9 300 78.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.9e-134 481.5 285 84.6
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 4.9e-134 481.5 308 79.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 6.4e-134 481.1 282 84.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 8.4e-134 480.7 300 77.3
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.1e-133 480.3 282 83.0
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-133 480.3 282 83.7
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-133 480.3 311 77.2
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.4e-133 479.9 286 84.6
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.9e-133 479.6 295 82.0
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.4e-133 479.2 296 82.1
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 2.4e-133 479.2 299 80.3
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.2e-133 478.8 281 83.6
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.2e-133 478.8 282 83.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.2e-133 478.4 282 83.7
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.4e-133 478.0 298 80.5
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 9.3e-133 477.2 296 79.7
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.1e-132 476.1 279 83.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.1e-132 476.1 284 83.5
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 2.1e-132 476.1 304 78.3
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.6e-132 474.9 295 80.3
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.0e-132 474.6 292 81.8
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 6.0e-132 474.6 299 78.6
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.3e-131 473.4 300 79.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.9e-131 471.9 282 84.4
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 8.7e-131 470.7 291 79.7
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.1e-130 470.3 288 79.5
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.9e-130 469.5 287 81.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.5e-130 469.2 281 81.9
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.5e-130 469.2 297 79.5
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 5.6e-130 468.0 299 77.9
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 9.6e-130 467.2 300 77.3
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.3e-129 466.8 298 78.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 2.1e-129 466.1 292 80.1
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.0e-128 461.8 266 84.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.0e-128 461.8 298 77.5
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.0e-127 459.5 294 76.2
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.0e-126 457.2 288 80.6
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.3e-126 456.8 293 77.8
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-126 456.8 302 75.5
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.1e-125 453.8 300 75.7
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.4e-125 453.4 272 83.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.4e-125 453.4 297 76.8
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 4.2e-125 451.8 292 77.4
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.1e-124 449.5 305 76.7
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 4.6e-124 448.4 326 72.1
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 6.0e-124 448.0 302 73.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 3.0e-123 445.7 293 77.1
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 3.3e-122 442.2 280 78.2
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 9.6e-122 440.7 290 75.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.1e-121 439.5 313 72.5
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 6.2e-121 438.0 288 75.0
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 4.9e-118 428.3 389 61.4
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.3e-117 424.1 256 82.8
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 5.1e-115 418.3 278 76.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 5.1e-115 418.3 259 79.9
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 6.7e-115 417.9 280 76.1
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 3.7e-113 412.1 264 78.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 3.1e-112 409.1 221 89.6
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.3e-112 408.3 221 90.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.9e-110 402.5 218 89.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.9e-110 402.5 218 89.0
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 5.5e-109 398.3 287 66.6
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.6e-108 395.2 250 74.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.9e-107 392.1 274 68.6
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 3.1e-104 382.5 251 72.5
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-103 379.4 307 67.1
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 9.4e-101 370.9 200 90.0
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 6.1e-100 368.2 260 68.8
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 6.7e-99 364.8 218 83.0
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.2e-92 344.0 215 80.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 6.3e-89 331.6 182 89.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.8e-88 330.1 182 87.9
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.9e-86 322.8 208 77.9
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 1.1e-80 304.3 174 85.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.1e-80 302.4 187 80.7
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.1e-76 290.0 221 71.9
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 8.6e-70 268.1 152 84.9
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.4e-66 255.8 194 65.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.2e-64 248.1 146 84.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-59 234.2 209 63.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.3e-49 201.1 272 44.9
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 6.0e-47 192.2 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.0e-46 189.9 158 64.6
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 8.6e-46 188.3 136 72.8
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.1e-43 179.9 178 57.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 6.4e-41 172.2 105 78.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 7.3e-37 158.7 86 87.2
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 6.2e-36 155.6 96 77.1
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 3.5e-31 139.8 309 32.7
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.3e-28 131.3 196 43.4
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-28 131.0 82 76.8
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-27 127.9 86 75.6
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 2.0e-26 124.0 170 42.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 2.2e-25 120.6 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 2.2e-25 120.6 66 89.4
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 2.1e-15 87.4 53 75.5
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.7e-15 87.0 158 38.6
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.9e-15 85.5 64 67.2
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.9e-15 85.5 64 67.2
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 3.0e-14 83.6 85 52.9
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 8.7e-14 82.0 79 62.0
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 5.6e-13 79.3 79 51.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.6e-12 77.8 92 50.0
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 6.9e-11 72.4 103 42.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.0e-11 72.0 64 59.4
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.0e-10 70.9 110 40.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.4e-08 64.7 61 57.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.2e-08 63.5 43 74.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 6.0e-07 59.3 53 56.6
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.0e-07 59.3 34 76.5
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 1.3e-06 58.2 57 45.6
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.7e-06 55.8 38 71.1


User provided reference genes

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