Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.2e-58 229.6 108 100.0
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 1.7e-28 129.4 94 71.3
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 2.2e-28 129.0 96 66.7
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 3.7e-28 128.3 105 66.7
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 3.7e-28 128.3 95 71.6
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 1.1e-27 126.7 105 65.7
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 3.1e-27 125.2 95 66.3
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 5.3e-27 124.4 105 63.8
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 6.9e-27 124.0 95 68.4
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 9.1e-27 123.6 95 69.5
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.5e-26 122.9 93 69.9
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.5e-26 122.9 94 69.1
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.0e-26 122.5 96 67.7
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 2.0e-26 122.5 93 69.9
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 2.0e-26 122.5 93 69.9
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.6e-26 122.1 93 68.8
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 2.6e-26 122.1 93 68.8
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 4.5e-26 121.3 95 65.3
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 4.5e-26 121.3 93 68.8
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 5.9e-26 120.9 93 68.8
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 5.9e-26 120.9 95 68.4
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 5.9e-26 120.9 95 68.4
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.9e-26 120.9 93 68.8
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 7.7e-26 120.6 93 68.8
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 7.7e-26 120.6 95 65.3
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 7.7e-26 120.6 95 65.3
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.7e-26 120.6 94 68.1
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 7.7e-26 120.6 95 66.3
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 7.7e-26 120.6 97 66.0
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.0e-25 120.2 96 65.6
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.0e-25 120.2 93 69.9
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.3e-25 119.8 93 68.8
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-25 119.4 93 66.7
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.7e-25 119.4 93 66.7
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 1.7e-25 119.4 95 66.3
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 2.9e-25 118.6 96 65.6
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.9e-25 118.6 95 67.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.9e-25 118.6 92 68.5
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.9e-25 118.6 93 68.8
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 3.8e-25 118.2 104 61.5
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 3.8e-25 118.2 91 68.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 3.8e-25 118.2 95 67.4
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 3.8e-25 118.2 96 65.6
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 3.8e-25 118.2 93 67.7
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 5.0e-25 117.9 94 63.8
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 5.0e-25 117.9 93 66.7
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 5.0e-25 117.9 96 62.5
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 5.0e-25 117.9 95 66.3
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 6.5e-25 117.5 93 67.7
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 8.5e-25 117.1 94 62.8
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 8.5e-25 117.1 93 66.7
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 8.5e-25 117.1 97 61.9
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 8.5e-25 117.1 97 61.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.1e-24 116.7 96 63.5
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.1e-24 116.7 94 62.8
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 1.1e-24 116.7 95 62.1
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.4e-24 116.3 95 65.3
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.4e-24 116.3 96 63.5
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.4e-24 116.3 96 63.5
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.5e-24 115.5 104 58.7
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 2.5e-24 115.5 95 63.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.2e-24 115.2 96 60.4
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 3.2e-24 115.2 93 66.7
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 3.2e-24 115.2 93 66.7
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 3.2e-24 115.2 92 64.1
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 3.2e-24 115.2 92 64.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 3.2e-24 115.2 93 65.6
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.5e-24 114.4 96 62.5
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 9.4e-24 113.6 117 53.0
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.6e-23 112.8 96 60.4
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.1e-23 112.5 96 62.5
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.6e-23 111.7 111 55.0
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 4.7e-23 111.3 95 61.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 3.9e-22 108.2 80 70.0
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 6.7e-22 107.5 92 59.8
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.1e-21 106.7 92 60.9
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.1e-21 106.7 92 60.9
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.1e-21 106.7 102 56.9
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.5e-21 106.3 92 60.9
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.0e-21 105.9 92 59.8
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 2.0e-21 105.9 82 63.4
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 2.6e-21 105.5 92 59.8
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 3.3e-21 105.1 95 61.1
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 4.4e-21 104.8 87 59.8
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 9.7e-21 103.6 91 58.2
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.7e-20 102.8 95 55.8
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 2.8e-20 102.1 80 63.8
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.4e-19 99.0 80 63.8
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 5.3e-19 97.8 97 53.6
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 2.6e-18 95.5 85 61.2
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 8.5e-17 90.5 78 57.7
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.4e-16 89.7 94 57.4
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.5e-16 89.0 70 68.6
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 9.4e-16 87.0 96 52.1
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 2.7e-15 85.5 95 51.6
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.9e-14 81.6 69 63.8
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 5.2e-14 81.3 84 56.0
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.4e-11 73.2 70 54.3
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 1.2e-10 70.1 91 41.8
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.5e-10 68.2 43 74.4
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 5.5e-08 61.2 79 40.5
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 7.2e-08 60.8 40 67.5


User provided reference genes

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