Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g04036 Nelumbo nucifera HOM05D000009 ORTHO05D025880 1.2e-102 376.7 216 100.0
Nn4g24346 Nelumbo nucifera HOM05D000009 ORTHO05D025880 6.1e-83 311.2 215 81.9
Nn006s41411 Nelumbo nucifera HOM05D000009 ORTHO05D025880 6.4e-48 194.9 216 55.1
Nn3g18362 Nelumbo nucifera HOM05D000009 ORTHO05D000008 5.3e-26 122.1 149 49.7
Nn3g16248 Nelumbo nucifera HOM05D000009 ORTHO05D025880 7.6e-17 91.7 103 50.5
Nn5g28060 Nelumbo nucifera HOM05D000009 ORTHO05D000008 4.2e-15 85.9 149 40.3
RcHm_v2.0_Chr1g0323841 Rosa chinensis HOM05D000009 ORTHO05D000008 2.7e-14 83.2 136 39.7
MBI09_g40720_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D000008 3.5e-14 82.8 152 37.5
FAN03G0120 Fragaria x ananassa HOM05D000009 ORTHO05D000008 3.0e-13 79.7 136 37.5
Nn006s41414 Nelumbo nucifera HOM05D000009 ORTHO05D025880 3.9e-13 79.3 118 50.0
Nn006s41413 Nelumbo nucifera HOM05D000009 ORTHO05D000008 5.1e-13 79.0 57 64.9
TAR371G0754 Trochodendron aralioides HOM05D000009 ORTHO05D000008 5.1e-13 79.0 114 40.4
FvH4_7g02890 Fragaria vesca HOM05D000009 ORTHO05D000008 6.7e-13 78.6 136 37.5
MBI19_g42118_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D000008 1.5e-12 77.4 147 37.4
Manes.04G165600 Manihot esculenta HOM05D000009 ORTHO05D000008 1.9e-12 77.0 146 38.4
Aqoxy3G03483 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 3.3e-12 76.3 130 40.0
Atru.chr6.998 Acer truncatum HOM05D000009 ORTHO05D000008 9.6e-12 74.7 194 30.4
MBI19_g38785_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D006588 1.6e-11 73.9 103 42.7
Dinv01145 Davidia involucrata HOM05D000009 ORTHO05D000008 6.3e-11 72.0 147 37.4
Ciclev10000029m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.4e-10 70.9 136 36.8
TPR.G29203 Trifolium pratense HOM05D000009 ORTHO05D000008 3.1e-10 69.7 144 34.0
Manes.10G133695 Manihot esculenta HOM05D000009 ORTHO05D000008 9.0e-10 68.2 158 36.7
Potri.017G121700 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.2e-09 67.8 149 32.9
Thecc.10G081900 Theobroma cacao HOM05D000009 ORTHO05D000008 1.5e-09 67.4 150 36.7
TPR.G10597 Trifolium pratense HOM05D000009 ORTHO05D000008 1.5e-09 67.4 147 34.7
Manes.10G133668 Manihot esculenta HOM05D000009 ORTHO05D000008 2.0e-09 67.0 154 35.7
CSS0013242 Camellia sinensis var. sinensis HOM05D000009 ORTHO05D000008 2.6e-09 66.6 147 34.0
Manes.11G129700 Manihot esculenta HOM05D000009 ORTHO05D000008 3.4e-09 66.2 170 32.4
TWI38G1642 Tripterygium wilfordii HOM05D000009 ORTHO05D000008 4.5e-09 65.9 139 36.0
Prupe.2G034400 Prunus persica HOM05D000009 ORTHO05D000008 5.9e-09 65.5 140 32.9
MBI19_g02445_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D006588 7.6e-09 65.1 134 35.1
Atru.chr11.2518 Acer truncatum HOM05D000009 ORTHO05D000008 1.0e-08 64.7 97 37.1
Gohir.A08G142200 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.0e-08 64.7 212 29.2
TAR636G2073 Trochodendron aralioides HOM05D000009 ORTHO05D000008 1.0e-08 64.7 146 38.4
GSVIVG01031535001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.3e-08 64.3 155 34.8
Atru.chr2.3817 Acer truncatum HOM05D000009 ORTHO05D000008 1.7e-08 63.9 199 33.2
GSVIVG01001429001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.7e-08 63.9 167 32.3
GSVIVG01007026001 Vitis vinifera HOM05D000009 ORTHO05D000008 2.2e-08 63.5 158 38.0
MBI19_g04324_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D006588 3.8e-08 62.8 103 36.9
Thecc.03G205700 Theobroma cacao HOM05D000009 ORTHO05D000008 3.8e-08 62.8 191 26.2
TPR.G24032 Trifolium pratense HOM05D000009 ORTHO05D000008 5.0e-08 62.4 216 30.1
TAR623G0857 Trochodendron aralioides HOM05D000009 ORTHO05D000008 6.5e-08 62.0 175 33.1
Manes.10G133665 Manihot esculenta HOM05D000009 ORTHO05D000008 8.5e-08 61.6 160 36.2
Manes.10G133710 Manihot esculenta HOM05D000009 ORTHO05D000008 8.5e-08 61.6 160 36.2
Nn2g15158 Nelumbo nucifera HOM05D000009 ORTHO05D000008 8.5e-08 61.6 139 37.4
Actinidia19415 Actinidia chinensis HOM05D000009 ORTHO05D000008 1.4e-07 60.8 146 37.0
Ciclev10030529m.g Citrus clementina HOM05D000009 ORTHO05D000008 1.4e-07 60.8 170 31.8
QL08p020906 Quercus lobata HOM05D000009 ORTHO05D000008 1.4e-07 60.8 140 35.7
GSVIVG01022931001 Vitis vinifera HOM05D000009 ORTHO05D000008 1.4e-07 60.8 151 39.7
TPR.G5098 Trifolium pratense HOM05D000009 ORTHO05D000008 2.5e-07 60.1 147 34.7
CiPaw.13G006000 Carya illinoinensis HOM05D000009 ORTHO05D000008 3.2e-07 59.7 136 33.8
Manes.10G133653 Manihot esculenta HOM05D000009 ORTHO05D000008 3.2e-07 59.7 157 35.0
Gohir.D08G163100 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.2e-07 59.3 188 29.8
GSVIVG01001448001 Vitis vinifera HOM05D000009 ORTHO05D000008 5.5e-07 58.9 214 30.8
QL02p066101 Quercus lobata HOM05D000009 ORTHO05D000008 7.2e-07 58.5 147 32.7
GSVIVG01006083001 Vitis vinifera HOM05D000009 ORTHO05D000008 7.2e-07 58.5 140 34.3
Manes.06G013900 Manihot esculenta HOM05D000009 ORTHO05D000008 9.3e-07 58.2 151 32.5
Manes.17G072100 Manihot esculenta HOM05D000009 ORTHO05D000008 9.3e-07 58.2 155 29.7
Prupe.1G541300 Prunus persica HOM05D000009 ORTHO05D000008 9.3e-07 58.2 139 31.7
QL11p004429 Quercus lobata HOM05D000009 ORTHO05D000008 9.3e-07 58.2 153 36.6
Potri.011G005900 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.2e-06 57.8 148 36.5
TPR.G10881 Trifolium pratense HOM05D000009 ORTHO05D000008 1.2e-06 57.8 213 30.0
arahy.Tifrunner.gnm1.ann1.CAI9RI Arachis hypogaea HOM05D000009 ORTHO05D000008 2.1e-06 57.0 152 28.9
Migut.J01295 Erythranthe guttata HOM05D000009 ORTHO05D006588 2.1e-06 57.0 61 47.5
Manes.10G112000 Manihot esculenta HOM05D000009 ORTHO05D000008 2.1e-06 57.0 131 35.9
Atru.chr11.2450 Acer truncatum HOM05D000005 ORTHO05D000008 2.7e-06 56.6 163 32.5
Ca_05584_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 2.7e-06 56.6 144 33.3
Dinv03134 Davidia involucrata HOM05D000009 ORTHO05D000008 2.7e-06 56.6 220 27.7
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 2.7e-06 56.6 199 29.1
QL02p103175 Quercus lobata HOM05D000009 ORTHO05D000008 2.7e-06 56.6 150 32.0
PGSC0003DMG400005046 Solanum tuberosum HOM05D000009 ORTHO05D000008 2.7e-06 56.6 150 34.0
TPR.G5112 Trifolium pratense HOM05D000009 ORTHO05D000008 2.7e-06 56.6 144 34.0
Aqoxy2G02945 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 3.6e-06 56.2 112 34.8
Aqoxy311s004 Aquilegia oxysepala HOM05D000009 ORTHO05D000008 3.6e-06 56.2 112 34.8
Cc00_g27700 Coffea canephora HOM05D000009 ORTHO05D000008 3.6e-06 56.2 139 30.9
Dinv10782 Davidia involucrata HOM05D000009 ORTHO05D004635 3.6e-06 56.2 210 30.0
Nn7g37246 Nelumbo nucifera HOM05D000009 ORTHO05D280704 3.6e-06 56.2 148 29.1
Nn7g37250 Nelumbo nucifera HOM05D000009 ORTHO05D006588 3.6e-06 56.2 148 29.1
TAR371G0792 Trochodendron aralioides HOM05D000009 ORTHO05D000008 3.6e-06 56.2 167 34.7
PGSC0003DMG404010943 Solanum tuberosum HOM05D000009 ORTHO05D004635 4.6e-06 55.8 180 32.2
QL02p065249 Quercus lobata HOM05D000009 ORTHO05D000008 6.1e-06 55.5 148 34.5
MBI19_g28109_MAGBIO Magnolia biondii HOM05D000009 ORTHO05D004635 7.9e-06 55.1 99 40.4
Sabra04G0132700 Salix brachista HOM05D000009 ORTHO05D000008 7.9e-06 55.1 137 32.1
Thecc.01G403600 Theobroma cacao HOM05D000009 ORTHO05D000008 7.9e-06 55.1 114 38.6
GSVIVG01029364001 Vitis vinifera HOM05D000009 ORTHO05D000008 7.9e-06 55.1 161 31.7


User provided reference genes

Program Settings