Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 1.2e-89 333.2 176 100.0
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 3.1e-61 238.8 176 72.2
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 2.9e-59 232.3 177 74.0
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 3.3e-58 228.8 181 69.6
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 9.5e-58 227.3 181 67.4
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 8.0e-57 224.2 177 71.2
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 1.8e-56 223.0 178 70.8
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 1.8e-56 223.0 178 70.8
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.8e-56 223.0 180 70.0
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 6.8e-56 221.1 178 68.0
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 4.4e-55 218.4 177 67.8
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 5.7e-55 218.0 177 67.2
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 5.7e-55 218.0 178 66.9
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 1.3e-54 216.9 176 67.6
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.3e-54 216.9 177 65.5
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 1.3e-54 216.9 185 69.7
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.7e-54 216.5 178 69.7
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 2.2e-54 216.1 177 69.5
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 2.2e-54 216.1 177 68.4
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 2.2e-54 216.1 176 67.0
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 2.2e-54 216.1 176 65.9
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 4.9e-54 214.9 177 65.5
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 8.3e-54 214.2 177 66.1
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 1.1e-53 213.8 182 67.0
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 1.1e-53 213.8 183 67.2
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 1.1e-53 213.8 176 67.0
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 1.8e-53 213.0 181 66.9
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 2.4e-53 212.6 176 67.0
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 3.2e-53 212.2 178 66.3
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 3.2e-53 212.2 176 67.6
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 3.2e-53 212.2 182 66.5
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 4.1e-53 211.8 178 66.3
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 5.4e-53 211.5 178 66.9
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 5.4e-53 211.5 178 66.9
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 5.4e-53 211.5 176 64.2
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 9.2e-53 210.7 176 65.9
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 1.2e-52 210.3 176 67.0
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 1.2e-52 210.3 176 63.1
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 1.6e-52 209.9 176 64.2
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 2.0e-52 209.5 176 67.0
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 2.7e-52 209.1 179 69.3
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 2.7e-52 209.1 169 70.4
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 2.7e-52 209.1 176 63.6
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 4.6e-52 208.4 180 65.0
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 1.3e-51 206.8 183 68.3
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 1.3e-51 206.8 176 64.2
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 1.7e-51 206.5 181 63.0
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 3.9e-51 205.3 180 65.6
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 3.9e-51 205.3 183 66.1
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 3.9e-51 205.3 182 64.3
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 5.0e-51 204.9 178 66.3
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 5.0e-51 204.9 181 65.2
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 6.6e-51 204.5 176 67.0
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 6.6e-51 204.5 179 65.4
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.5e-50 203.4 182 64.8
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 1.9e-50 203.0 177 67.2
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 2.5e-50 202.6 178 65.7
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 2.5e-50 202.6 178 62.4
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 2.5e-50 202.6 177 63.8
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 3.3e-50 202.2 178 65.7
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 7.3e-50 201.1 177 66.1
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 1.6e-49 199.9 179 65.9
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 1.6e-49 199.9 175 63.4
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 1.6e-49 199.9 177 63.8
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 2.8e-49 199.1 183 62.8
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 3.6e-49 198.7 179 62.6
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 4.7e-49 198.4 173 63.6
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 6.2e-49 198.0 180 61.1
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 8.0e-49 197.6 177 62.7
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.4e-48 196.8 182 62.1
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 1.4e-48 196.8 177 59.3
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.1e-48 195.7 179 64.8
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 6.8e-48 194.5 177 63.3
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.2e-47 193.7 182 62.6
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.5e-47 193.4 181 64.6
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 2.0e-47 193.0 177 62.7
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 2.6e-47 192.6 116 83.6
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 7.5e-47 191.0 181 64.1
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 9.8e-47 190.7 180 61.7
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.7e-46 189.9 117 83.8
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 1.7e-46 189.9 114 85.1
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 2.2e-46 189.5 172 64.0
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 2.2e-46 189.5 118 81.4
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 2.9e-46 189.1 145 70.3
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 3.7e-46 188.7 181 60.2
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 3.7e-46 188.7 135 71.9
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 8.3e-46 187.6 178 59.6
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 1.1e-45 187.2 182 58.8
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 3.2e-45 185.7 121 79.3
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 5.4e-45 184.9 179 60.9
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 9.2e-45 184.1 183 56.8
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 1.2e-44 183.7 180 60.6
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 4.6e-44 181.8 181 58.6
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 6.0e-44 181.4 176 59.7
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 7.8e-44 181.0 180 59.4
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 1.3e-43 180.3 180 59.4
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 5.0e-43 178.3 181 56.9
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 6.6e-43 177.9 180 59.4
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 6.6e-43 177.9 167 61.1
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 8.6e-43 177.6 181 58.0
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 1.1e-42 177.2 156 61.5
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 2.5e-42 176.0 181 57.5
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 2.5e-42 176.0 103 83.5
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 3.3e-42 175.6 180 58.3
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 3.3e-42 175.6 180 57.8
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 3.3e-42 175.6 180 57.8
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 4.3e-42 175.3 180 58.3
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 4.3e-42 175.3 180 58.3
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 4.3e-42 175.3 176 55.7
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 5.6e-42 174.9 180 57.8
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 5.6e-42 174.9 183 57.4
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 5.6e-42 174.9 170 58.8
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 2.1e-41 172.9 105 80.0
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 2.1e-41 172.9 178 59.0
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 1.0e-35 154.1 133 68.4
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 3.0e-35 152.5 110 68.2
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 4.3e-34 148.7 85 85.9
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 4.7e-33 145.2 146 55.5
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.8e-32 143.3 144 62.5
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 6.8e-32 141.4 138 56.5
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 1.3e-30 137.1 185 45.4
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 2.7e-28 129.4 169 47.9
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 6.0e-28 128.3 126 53.2
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 6.6e-27 124.8 118 55.1
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 1.9e-21 106.7 141 41.8
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.6e-20 103.6 162 40.1
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 5.6e-18 95.1 132 47.7
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 1.6e-17 93.6 170 41.8
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 9.9e-07 57.8 98 27.6
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 29.6
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 2.2e-06 56.6 98 28.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.2e-06 56.6 98 28.6
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 28.6
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 3.8e-06 55.8 98 28.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 3.8e-06 55.8 98 28.6
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 4.9e-06 55.5 98 27.6
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 8.4e-06 54.7 98 27.6
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 8.4e-06 54.7 98 27.6


User provided reference genes

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