Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.5e-56 221.9 109 100.0
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.4e-19 99.0 50 90.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.4e-19 99.0 50 90.0
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 4.1e-19 98.2 49 91.8
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 4.1e-19 98.2 49 91.8
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 4.1e-19 98.2 49 91.8
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 4.1e-19 98.2 49 91.8
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.4e-19 97.8 48 93.8
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 7.0e-19 97.4 52 82.7
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 9.2e-19 97.1 49 89.8
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 9.2e-19 97.1 49 89.8
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.2e-19 97.1 49 89.8
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 9.2e-19 97.1 49 89.8
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 9.2e-19 97.1 49 89.8
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.2e-18 96.7 49 89.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-18 96.7 51 84.3
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.2e-18 96.7 49 89.8
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.2e-18 96.7 49 89.8
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.2e-18 96.7 49 89.8
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.2e-18 96.7 50 86.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.6e-18 96.3 48 91.7
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.6e-18 96.3 55 80.0
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.6e-18 96.3 48 91.7
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-18 95.9 48 89.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 2.0e-18 95.9 50 86.0
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 2.7e-18 95.5 50 84.0
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.5e-18 95.1 49 87.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 3.5e-18 95.1 48 89.6
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 4.5e-18 94.7 48 89.6
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 4.5e-18 94.7 48 87.5
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 4.5e-18 94.7 50 84.0
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 5.9e-18 94.4 50 84.0
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 7.8e-18 94.0 48 87.5
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.8e-18 94.0 48 87.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 7.8e-18 94.0 48 87.5
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 7.8e-18 94.0 48 87.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 7.8e-18 94.0 48 87.5
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.0e-17 93.6 50 84.0
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.0e-17 93.6 50 84.0
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.0e-17 93.6 50 84.0
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.0e-17 93.6 48 87.5
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.0e-17 93.6 50 84.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.3e-17 93.2 48 87.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.3e-17 93.2 48 87.5
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.3e-17 93.2 50 82.0
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.7e-17 92.8 49 85.7
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.7e-17 92.8 50 80.0
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 2.3e-17 92.4 50 82.0
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 2.3e-17 92.4 48 87.5
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.3e-17 92.4 48 87.5
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.3e-17 92.4 48 87.5
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.3e-17 92.4 48 87.5
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.9e-17 92.0 50 80.0
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 2.9e-17 92.0 48 85.4
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.9e-17 92.0 50 80.0
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 3.8e-17 91.7 48 85.4
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 5.0e-17 91.3 51 84.3
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.0e-17 91.3 50 78.0
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.0e-17 91.3 48 85.4
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.0e-17 91.3 48 85.4
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 5.0e-17 91.3 48 83.3
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 5.0e-17 91.3 48 85.4
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 6.6e-17 90.9 48 83.3
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 8.6e-17 90.5 48 85.4
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-16 90.1 51 78.4
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.1e-16 90.1 48 83.3
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.1e-16 90.1 48 81.2
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.1e-16 90.1 48 83.3
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.1e-16 90.1 50 80.0
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.5e-16 89.7 50 78.0
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.9e-16 89.4 48 83.3
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 4.3e-16 88.2 48 83.3
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 5.6e-16 87.8 50 76.0
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 5.6e-16 87.8 48 81.2
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 7.3e-16 87.4 50 78.0
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 9.5e-16 87.0 48 81.2
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.2e-15 86.7 48 83.3
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.2e-15 86.7 46 87.0
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.1e-15 85.9 48 79.2
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 8.0e-15 84.0 48 72.9
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 6.8e-14 80.9 50 76.0
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 7.5e-13 77.4 48 66.7
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 1.4e-11 73.2 47 68.1
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 2.4e-11 72.4 52 63.5
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 4.6e-10 68.2 46 63.0


User provided reference genes

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